View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8831_high_8 (Length: 288)
Name: NF8831_high_8
Description: NF8831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8831_high_8 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 127 - 288
Target Start/End: Original strand, 26374537 - 26374698
Alignment:
| Q |
127 |
ctccaactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaacctatcaaagcgtgcaacattcgcccaaacttt |
226 |
Q |
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| T |
26374537 |
ctcctactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaacctatcaaagcgtgcaacattcgcccaaacttt |
26374636 |
T |
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| Q |
227 |
attctgaccaaaataaacattattaagagctttctgaagttttgtgatgtccatctcattga |
288 |
Q |
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| T |
26374637 |
attctgaccaaaataaacattattaagagctttctgaagttttgtgacgtccttcacattga |
26374698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 127 - 288
Target Start/End: Original strand, 25589322 - 25589483
Alignment:
| Q |
127 |
ctccaactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaacctatcaaagcgtgcaacattcgcccaaacttt |
226 |
Q |
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| T |
25589322 |
ctcctactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaacctatcaaagcgtgcaacattcgcccaaacttt |
25589421 |
T |
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| Q |
227 |
attctgaccaaaataaacattattaagagctttctgaagttttgtgatgtccatctcattga |
288 |
Q |
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| T |
25589422 |
attctgaccaaaataaacattattgagagctttctgaagttttgtgacgtccttcacattga |
25589483 |
T |
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Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 127 - 270
Target Start/End: Original strand, 17919048 - 17919191
Alignment:
| Q |
127 |
ctccaactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaacctatcaaagcgtgcaacattcgcccaaacttt |
226 |
Q |
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| T |
17919048 |
ctcctactgcagccggtttcttaccatcctccaacccattcaacagttctgttttaacctcaccaaacttatcaaagcgtgcaacattcgcccaaacttt |
17919147 |
T |
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| Q |
227 |
attctgaccaaaataaacattattaagagctttctgaagttttg |
270 |
Q |
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| T |
17919148 |
attctgaccaaaataaatattattaagagctttctgtagttttg |
17919191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 127 - 288
Target Start/End: Complemental strand, 14127035 - 14126874
Alignment:
| Q |
127 |
ctccaactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaacctatcaaagcgtgcaacattcgcccaaacttt |
226 |
Q |
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|||| |||||||||| ||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||| ||||||||| | ||||||||| |
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| T |
14127035 |
ctcctactgcagccgatttcttaccatcctccaacccattcaacggtacttttttaacctcaccaaacctatcaaagcatgcaacatttgtccaaacttt |
14126936 |
T |
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| Q |
227 |
attctgaccaaaataaacattattaagagctttctgaagttttgtgatgtccatctcattga |
288 |
Q |
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| T |
14126935 |
attctgaccaaaataaacattattaagagctttttgtagttttgcgacgtccttcacattga |
14126874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 12927545 - 12927660
Alignment:
| Q |
147 |
ttaccatcctccaatccattcaacagttcttttttaacctcaccaaacctatcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaacat |
246 |
Q |
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|||||||||||||| | |||||||| || || ||||||| |||||||| ||||| ||||| | ||||||||| ||| ||| ||| || || |||||| |
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| T |
12927545 |
ttaccatcctccaactccttcaacagctccttcctaacctccccaaacctgtcaaaacgtgcgatattcgcccacactctatactggcctaatgaaacat |
12927644 |
T |
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| Q |
247 |
tattaagagctttctg |
262 |
Q |
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| T |
12927645 |
tattaagagctttctg |
12927660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 8758559 - 8758630
Alignment:
| Q |
168 |
aacagttcttttttaacctcaccaaacctatcaaagcgtgcaacattcgcccaaactttattctgaccaaaa |
239 |
Q |
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| T |
8758559 |
aacaattcttttttaacttctccaaacctatcaaaacgcgcaacatttgcccacactctattcggaccaaaa |
8758630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 162 - 270
Target Start/End: Complemental strand, 24081029 - 24080921
Alignment:
| Q |
162 |
ccattcaacagttcttttttaacctcaccaaacctatcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaacattattaagagctttct |
261 |
Q |
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||||| |||| |||||| ||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| | |||||||| ||| |||||| |
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| T |
24081029 |
ccattgaacaattctttcttaacctcaccaaacctatcaaagcatgcaacattttcccacactttattctgaccaaaaaagacattattcagaactttct |
24080930 |
T |
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| Q |
262 |
gaagttttg |
270 |
Q |
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| T |
24080929 |
gcagttttg |
24080921 |
T |
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