View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8831_low_11 (Length: 330)
Name: NF8831_low_11
Description: NF8831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8831_low_11 |
 | |
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| [»] chr1 (2 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
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| [»] scaffold0313 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0764 (1 HSPs) |
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| [»] scaffold1531 (1 HSPs) |
| | |
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| [»] scaffold0059 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 2 - 330
Target Start/End: Complemental strand, 1976681 - 1976353
Alignment:
| Q |
2 |
caggatgtggctgaaattcttgtctctcaaagaatgagtgagggacatgatgaaatggatcctcaagagtttgagcaagctgaaaatcaaactggctttg |
101 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1976681 |
caggatgtggctgaaatccttgtctctcaaagaatgagtgagggacacgatgaaatggatcctcaagagtttgagcaagctgataatcaaactggctttg |
1976582 |
T |
|
| Q |
102 |
atctaaatgtggaagatccaagcacagatttgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgcaagctcatgaaatgattcaggaact |
201 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1976581 |
atctaaatatggaagatcctagcacagatttgcatgtgtaccaagatgcacaacctgaaaacaatgaggaagtgcaagctcatgaaatgattcaggaact |
1976482 |
T |
|
| Q |
202 |
tcaagaaaatcctgcaatcacagttctgaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctattcct |
301 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1976481 |
tcaagaaaatcctgcaatcacagttcagaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctattcct |
1976382 |
T |
|
| Q |
302 |
caagcatcaggatcacttccctctgatga |
330 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1976381 |
caagcatcaggatcacttccctctgatga |
1976353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 2 - 330
Target Start/End: Complemental strand, 1984047 - 1983719
Alignment:
| Q |
2 |
caggatgtggctgaaattcttgtctctcaaagaatgagtgagggacatgatgaaatggatcctcaagagtttgagcaagctgaaaatcaaactggctttg |
101 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1984047 |
caggatgtggctgaaatccttgtctctcaaagaatgagtgagggacacgatgaaatggatcctcaagagtttgagcaagctgataatcaaactggctttg |
1983948 |
T |
|
| Q |
102 |
atctaaatgtggaagatccaagcacagatttgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgcaagctcatgaaatgattcaggaact |
201 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1983947 |
atctaaatatggaagatcctagcacagatttgcatgtgtaccaagatgcacaacctgaaaacaatgaggaagtgcaagctcatgaaatgattcaggaact |
1983848 |
T |
|
| Q |
202 |
tcaagaaaatcctgcaatcacagttctgaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctattcct |
301 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1983847 |
tcaagaaattcctgcaatcatagttcagaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctattcct |
1983748 |
T |
|
| Q |
302 |
caagcatcaggatcacttccctctgatga |
330 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1983747 |
caagcatcaggatcacttccctctgatga |
1983719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 5 - 330
Target Start/End: Complemental strand, 27161917 - 27161586
Alignment:
| Q |
5 |
gatgtggctgaaattcttgtctctcaaagaatgagtgagggacatgatgaaatggatcctcaagagtttgagcaagctgaaaatcaaactggctttgatc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27161917 |
gatgtggctgaaattcttgtctctcaaagaatgagtgatggacatgatgaaatggagcctcaagagtttgagcaagctgaaaatcaaactggctttgatc |
27161818 |
T |
|
| Q |
105 |
taaatgtggaagatccaagcacagatttgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattcagga |
198 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
27161817 |
taaatgtggaagatccaagctcagatgtgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgcttcaggaagctcacgaaatgattcagga |
27161718 |
T |
|
| Q |
199 |
acttcaagaaaatcctgcaatcacagttctgaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctatt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27161717 |
acttcaagaaaatcctgcaatcacagttcagaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctatt |
27161618 |
T |
|
| Q |
299 |
cctcaagcatcaggatcacttccctctgatga |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
27161617 |
cctcaagcatcaggatcacttccctctgatga |
27161586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 5 - 211
Target Start/End: Complemental strand, 22910710 - 22910498
Alignment:
| Q |
5 |
gatgtggctgaaattcttgtctctcaaagaatgagtgagggacatgatgaaatggatcctcaagagtttgagcaagctgaaaatcaaactggctttgatc |
104 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
22910710 |
gatgttgctgaaattcttgtctctcaaaggatgagtgagggacatgatgaaatggattctcaagaaattgagcaagctgaaaaccaaactggctttgatc |
22910611 |
T |
|
| Q |
105 |
taaatgtggaagatccaagcacagatttgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagt------gcaagctcatgaaatgattcagga |
198 |
Q |
| |
|
|||||||||| ||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
22910610 |
taaatgtggaggatccaagctcatatttgaatgtgtaccaagatgcacaacctgaaaacaatgaggaagtgtttcaggaagctcattaaatgattcagga |
22910511 |
T |
|
| Q |
199 |
acttcaagaaaat |
211 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22910510 |
acttcaagaaaat |
22910498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 116 - 326
Target Start/End: Original strand, 23720136 - 23720352
Alignment:
| Q |
116 |
gatccaagcacagatttgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattcaggaacttcaagaaa |
209 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| || ||||||||||||| |||||||||||| |
|
|
| T |
23720136 |
gatccaagctcagatttaaatgtgtaccaagatgcacagcctgaaaacaatgaggatgtgcttcaggaagatcgtgaaatgattcagaaacttcaagaaa |
23720235 |
T |
|
| Q |
210 |
atcctgcaatcacagttctgaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctattcctcaagcatc |
309 |
Q |
| |
|
|||||||||||| ||||| |||| ||||| ||||||| |||||||||||||||||||||| |||||||| ||||||| ||| || |||||||||||||| |
|
|
| T |
23720236 |
atcctgcaatcatagttcataatgctcagaaaaatgcaactgctgaacctagcttgcctcaggagaatgaaatgtcagttgaccccattcctcaagcatc |
23720335 |
T |
|
| Q |
310 |
aggatcacttccctctg |
326 |
Q |
| |
|
|||||| || ||||||| |
|
|
| T |
23720336 |
aggatctctgccctctg |
23720352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 326
Target Start/End: Complemental strand, 22910507 - 22910449
Alignment:
| Q |
268 |
tcaagagaatgagatgtcagctgatcctattcctcaagcatcaggatcacttccctctg |
326 |
Q |
| |
|
|||||| ||||| ||||||| ||| || |||||||||||||||||||| || ||||||| |
|
|
| T |
22910507 |
tcaagaaaatgaaatgtcagttgaccccattcctcaagcatcaggatctctgccctctg |
22910449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: scaffold0313
Description:
Target: scaffold0313; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 5 - 330
Target Start/End: Original strand, 3813 - 4144
Alignment:
| Q |
5 |
gatgtggctgaaattcttgtctctcaaagaatgagtgagggacatgatgaaatggatcctcaagagtttgagcaagctgaaaatcaaactggctttgatc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3813 |
gatgtggctgaaattcttgtctctcaaagaatgagtgatggacatgatgaaatggagcctcaagagtttgagcaagctgaaaatcaaactggctttaatc |
3912 |
T |
|
| Q |
105 |
taaatgtggaagatccaagcacagatttgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattcagga |
198 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
3913 |
taaatgtggaagatccaagctcagatgtgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgcttcaggaagctcacgaaatgattcagga |
4012 |
T |
|
| Q |
199 |
acttcaagaaaatcctgcaatcacagttctgaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctatt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4013 |
acttcaagaaaatcctgcaatcacagttcagaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagttgatcctatt |
4112 |
T |
|
| Q |
299 |
cctcaagcatcaggatcacttccctctgatga |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4113 |
cctcaagcatcaggatcacttccctctgatga |
4144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 5 - 330
Target Start/End: Original strand, 17970 - 18301
Alignment:
| Q |
5 |
gatgtggctgaaattcttgtctctcaaagaatgagtgagggacatgatgaaatggatcctcaagagtttgagcaagctgaaaatcaaactggctttgatc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17970 |
gatgtggctgaaattcttgtctctcaaagaatgagtgatggacatgatgaaatggagcctcaagagtttgagcaagctgaaaatcaaactggctttaatc |
18069 |
T |
|
| Q |
105 |
taaatgtggaagatccaagcacagatttgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattcagga |
198 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
18070 |
taaatgtggaagatccaagctcagatgtgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgcttcaggaagctcacgaaatgattcagga |
18169 |
T |
|
| Q |
199 |
acttcaagaaaatcctgcaatcacagttctgaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctatt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18170 |
acttcaagaaaatcctgcaatcacagttcagaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagttgatcctatt |
18269 |
T |
|
| Q |
299 |
cctcaagcatcaggatcacttccctctgatga |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
18270 |
cctcaagcatcaggatcacttccctctgatga |
18301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 5 - 330
Target Start/End: Original strand, 20956271 - 20956602
Alignment:
| Q |
5 |
gatgtggctgaaattcttgtctctcaaagaatgagtgagggacatgatgaaatggatcctcaagagtttgagcaagctgaaaatcaaactggctttgatc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
20956271 |
gatgtggctgaaattcttgtctctcaaagaatgagtgatggacatgatgaaatggagcctcaaggttttgagcaagctgaaaatcaaactggccttgatc |
20956370 |
T |
|
| Q |
105 |
taaatgtggaagatccaagcacagatttgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattcagga |
198 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
20956371 |
taaatgtggaagatccaagctcagatgtgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgcttcaggaagctcacgaaatgattcagga |
20956470 |
T |
|
| Q |
199 |
acttcaagaaaatcctgcaatcacagttctgaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctatt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20956471 |
acttcaagaaaatcctgcaatcacagttcagaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcctatt |
20956570 |
T |
|
| Q |
299 |
cctcaagcatcaggatcacttccctctgatga |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
20956571 |
cctcaagcatcaggatcacttccctctgatga |
20956602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0764 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: scaffold0764
Description:
Target: scaffold0764; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 5 - 330
Target Start/End: Complemental strand, 2802 - 2468
Alignment:
| Q |
5 |
gatgtggctgaaattcttgtctctcaaa-gaatgagtgagggacatgatgaaatggatcctcaagagtttgagcaagctgaaaat--caaactggctttg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2802 |
gatgtggctgaaattcttgtctctcaaaagaatgagtgatggacatgatgaaatggagcctcaagagtttgagcaagctgaaaaatacaaactggcttta |
2703 |
T |
|
| Q |
102 |
atctaaatgtggaagatccaagcacagatttgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgc------aagctcatgaaatgattca |
195 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
2702 |
atctaaatgtggaagatccaagctcagatgtgaatgtgtaccaagatgcacagcctgaaaacaatgaggaagtgcttcaggaagctcacgaaatgattca |
2603 |
T |
|
| Q |
196 |
ggaacttcaagaaaatcctgcaatcacagttctgaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagctgatcct |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2602 |
ggaacttcaagaaaatcctgcaatcacagttcagaatgttcagacaaatgcatctgctgaacctagcttgcctcaagagaatgagatgtcagttgatcct |
2503 |
T |
|
| Q |
296 |
attcctcaagcatcaggatcacttccctctgatga |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
2502 |
attcctcaagcatcaggatcacttccctctgatga |
2468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1531 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold1531
Description:
Target: scaffold1531; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 1576 - 1685
Alignment:
| Q |
5 |
gatgtggctgaaattcttgtctctcaaagaatgagtgagggacatgatgaaatggatcctcaagagtttgagcaagctgaaaatcaaactggctttgatc |
104 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
1576 |
gatgtggctgaaatccttgtctctcaaaggatgagtgagggacatgatgaaatggattctcaagaaattgagcaagctgataatcaaactggctttgatc |
1675 |
T |
|
| Q |
105 |
taaatgtgga |
114 |
Q |
| |
|
|||||||||| |
|
|
| T |
1676 |
taaatgtgga |
1685 |
T |
|
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Target: scaffold0059 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 42404 - 42347
Alignment:
| Q |
188 |
atgattcaggaacttcaagaaaatcctgcaatcacagttctgaatgttcagacaaatg |
245 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| ||||| ||||||||| ||||||| |
|
|
| T |
42404 |
atgattcaggatattcaagaaaatcctgaaatcatagttcagaatgttcaaacaaatg |
42347 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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