View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8831_low_14 (Length: 305)
Name: NF8831_low_14
Description: NF8831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8831_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 42224382 - 42224101
Alignment:
| Q |
18 |
acacttccaccacaattgggtcaactccataatctacagactttagacttttctgtcaataatctcacaggtcaaattccttcaacctttggcaatctct |
117 |
Q |
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| T |
42224382 |
acacttccaccacaattgggtcaactccataatctacagagtttagacttttctgtcaataatctcacaggtcaaattccttcaacctttggcaatctct |
42224283 |
T |
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| Q |
118 |
tatctctcaagaatctttccatggcaaggaacatgcttgagggtgaaattccaagtgaattgggcaatctccacaatctttcaagacttcaactctcaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224282 |
tatctctcaagaatctttccatggcaaggaacatgcttgagggtgaaattccaagtgaattgggcaatctccacaatctttcaagacttcaactctcaga |
42224183 |
T |
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| Q |
218 |
gaataacttcaccggcaagcttcctacttctatcttcaacttatcttccttagttttcttatccctcacacagaataatcta |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42224182 |
gaataacttcaccggcaagcttcctacttctatcttcaacttatcttccttagttttcttatccctcacacagaacaatcta |
42224101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 42212166 - 42211885
Alignment:
| Q |
18 |
acacttccaccacaattgggtcaactccataatctacagactttagacttttctgtcaataatctcacaggtcaaattccttcaacctttggcaatctct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
42212166 |
acacttccaccacaattgggtcaactccataatctacaaagtttagacttttctgtcaataatctcactggtaaaattccttcaacctttggcaatctct |
42212067 |
T |
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| Q |
118 |
tatctctcaagaatctttccatggcaaggaacatgcttgagggtgaaattccaagtgaattgggcaatctccacaatctttcaagacttcaactctcaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212066 |
tatctctcaagaatctttccatggcaaggaacatgcttgagggtgaaattccaagtgaattgggcaatctccacaatctttcaagacttcaactctcaga |
42211967 |
T |
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| Q |
218 |
gaataacttcaccggcaagcttcctacttctatcttcaacttatcttccttagttttcttatccctcacacagaataatcta |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42211966 |
gaataacttcaccggcaagcttcctacttctatcttcaacttatcttccttagttttcttatccctcacacagaacaatcta |
42211885 |
T |
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