View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8831_low_19 (Length: 260)
Name: NF8831_low_19
Description: NF8831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8831_low_19 |
 | |
|
| [»] scaffold0041 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 134; Significance: 8e-70; HSPs: 4)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 104 - 241
Target Start/End: Original strand, 95527 - 95664
Alignment:
| Q |
104 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatatgagatatatggctaatcatgagaccgatgaag |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
95527 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatataagatatatggctaatcatgagaccgatgaag |
95626 |
T |
|
| Q |
204 |
tgtatgcaaaactcagacttgtccctatgaatattaac |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
95627 |
tgtatgcaaaactcagacttgtccctatgaatattaac |
95664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 104 - 241
Target Start/End: Original strand, 87511 - 87648
Alignment:
| Q |
104 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatatgagatatatggctaatcatgagaccgatgaag |
203 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
87511 |
tgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatgtagagttgaagctataagatatatggctaatcatgagaccgatgaag |
87610 |
T |
|
| Q |
204 |
tgtatgcaaaactcagacttgtccctatgaatattaac |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
87611 |
tgtatgcaaaactcagacttgtccctatgaatattaac |
87648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 87405 - 87474
Alignment:
| Q |
34 |
gagtgtggaccctcagctatggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
103 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
87405 |
gagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaagttaactcacag |
87474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 95440 - 95490
Alignment:
| Q |
53 |
tggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
95440 |
tggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
95490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 104 - 241
Target Start/End: Complemental strand, 40870755 - 40870618
Alignment:
| Q |
104 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatatgagatatatggctaatcatgagaccgatgaag |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40870755 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatataagatatatggctaatcatgagaccgatgaag |
40870656 |
T |
|
| Q |
204 |
tgtatgcaaaactcagacttgtccctatgaatattaac |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870655 |
tgtatgcaaaactcagacttgtccctatgaatattaac |
40870618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 104 - 241
Target Start/End: Complemental strand, 40878772 - 40878635
Alignment:
| Q |
104 |
tgtgagccggtgaatttcagtgcttactccaaaattccatctttcattccatgtagagttgaagatatgagatatatggctaatcatgagaccgatgaag |
203 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40878772 |
tgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattccatgtagagttgaagctataagatatatggctaatcatgagaccgatgaag |
40878673 |
T |
|
| Q |
204 |
tgtatgcaaaactcagacttgtccctatgaatattaac |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40878672 |
tgtatgcaaaactcagacttgtccctatgaatattaac |
40878635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 40878878 - 40878809
Alignment:
| Q |
34 |
gagtgtggaccctcagctatggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
103 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40878878 |
gagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaagttaactcacag |
40878809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 40870842 - 40870792
Alignment:
| Q |
53 |
tggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870842 |
tggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacag |
40870792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University