View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8831_low_21 (Length: 245)
Name: NF8831_low_21
Description: NF8831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8831_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 3978604 - 3978843
Alignment:
| Q |
1 |
gcaggattttggggaggaacatgaagcctataatgttgttttgcaacatgtaaaagctaactaagcttcaatatgcattgatttgtcaatttcaatttga |
100 |
Q |
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| T |
3978604 |
gcaggattttggggaggaacatgaagcctataatgttgttttgcaacatgtaaaagctaactaagcttcaatatgcattgatttgtcaatttcaatttga |
3978703 |
T |
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| Q |
101 |
agtttttgtacgactgtcatggattttgcctttatgaagtatctgctaagtgattttgatgg----------tttatgatggtgtgacactcgattcatc |
190 |
Q |
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| T |
3978704 |
agtttttgtacgactgtcatggattttgcctttatgaagtatctgctaagtgattttgatggtttatgatgttttatgatggtgtgacactcgattcatc |
3978803 |
T |
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| Q |
191 |
ccattgctgctcttactcaattttgactacatgctctgat |
230 |
Q |
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| T |
3978804 |
ccattgctgctcttactcaattttgactacatgctctgat |
3978843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 27865093 - 27865038
Alignment:
| Q |
3 |
aggattttggggaggaacatgaagcctataatgttgttttgcaacatgtaaaagct |
58 |
Q |
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| T |
27865093 |
aggattttggggaggaacatgaagcctacaatgttgttttgcagcacgtcaaagct |
27865038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 827590 - 827646
Alignment:
| Q |
2 |
caggattttggggaggaacatgaagcctataatgttgttttgcaacatgtaaaagct |
58 |
Q |
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| T |
827590 |
caggactttggggaggaacatgaagcctacaatgttgttctgcagcacgtgaaagct |
827646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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