View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8831_low_23 (Length: 241)
Name: NF8831_low_23
Description: NF8831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8831_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 40945688 - 40945476
Alignment:
| Q |
20 |
ttttctccggttagtaaaccagttcctagctcctctctcacaaatttgtaaagtggataggatctgcatcccttgatcttatttggaattgttgggtttc |
119 |
Q |
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|||||||| ||||||||||||||||| | ||||||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| |
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| T |
40945688 |
ttttctccagttagtaaaccagttcccaactcctctctaacaaacttgtaaagtggataagatctgcatccattgatcttgtttggaattgttgggtttc |
40945589 |
T |
|
| Q |
120 |
cactctcatatgcggtccttgcactttcaacctcttttggcaagaggctcttcaactcttcctcaaaagttgcaatcttttgaaagattgaagtgttcaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40945588 |
cactctcatatgcggtccttgcactttcaacctcttttggcaagaggctcttcaactcttcctcaaaagttgcaatcttttgaaagattgaagtgttcaa |
40945489 |
T |
|
| Q |
220 |
attcttctcactc |
232 |
Q |
| |
|
||||||||||||| |
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|
| T |
40945488 |
attcttctcactc |
40945476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 40959653 - 40959441
Alignment:
| Q |
20 |
ttttctccggttagtaaaccagttcctagctcctctctcacaaatttgtaaagtggataggatctgcatcccttgatcttatttggaattgttgggtttc |
119 |
Q |
| |
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|||||||| ||||||||||||||||| | ||||||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| |
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| T |
40959653 |
ttttctccagttagtaaaccagttcccaactcctctctaacaaacttgtaaagtggataagatctgcatccattgatcttgtttggaattgttgggtttc |
40959554 |
T |
|
| Q |
120 |
cactctcatatgcggtccttgcactttcaacctcttttggcaagaggctcttcaactcttcctcaaaagttgcaatcttttgaaagattgaagtgttcaa |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40959553 |
cactctcatatgcggtccttgcactttcaacctcttttggcaagaggctcttcaactcttcctcaaaagttgcaatcttttgaaagattgaagtgttcaa |
40959454 |
T |
|
| Q |
220 |
attcttctcactc |
232 |
Q |
| |
|
||||||||||||| |
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| T |
40959453 |
attcttctcactc |
40959441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 228
Target Start/End: Original strand, 28183836 - 28183939
Alignment:
| Q |
125 |
tcatatgcggtccttgcactttcaacctcttttggcaagaggctcttcaactcttcctcaaaagttgcaatcttttgaaagattgaagtgttcaaattct |
224 |
Q |
| |
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|||||||| ||||||||||||||||| || |||||||||| |||||| || |||||||| |||||||||||||| |||||||| |||||| |||||| |
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| T |
28183836 |
tcatatgctgtccttgcactttcaacttcctttggcaagatagccttcaattcatcctcaaatgttgcaatcttttggaagattgatgtgttcgaattct |
28183935 |
T |
|
| Q |
225 |
tctc |
228 |
Q |
| |
|
|||| |
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|
| T |
28183936 |
tctc |
28183939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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