View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8831_low_24 (Length: 240)

Name: NF8831_low_24
Description: NF8831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8831_low_24
NF8831_low_24
[»] chr5 (3 HSPs)
chr5 (13-218)||(33957480-33957682)
chr5 (129-170)||(25216905-25216946)
chr5 (129-170)||(25281060-25281101)
[»] scaffold0438 (1 HSPs)
scaffold0438 (13-223)||(6267-6474)
[»] chr8 (3 HSPs)
chr8 (13-223)||(26291885-26292092)
chr8 (13-223)||(26305142-26305349)
chr8 (13-223)||(26338497-26338704)
[»] chr3 (5 HSPs)
chr3 (119-223)||(8032349-8032450)
chr3 (129-220)||(1205264-1205352)
chr3 (129-220)||(1303750-1303838)
chr3 (187-223)||(24104122-24104158)
chr3 (183-222)||(7034141-7034180)
[»] chr7 (3 HSPs)
chr7 (125-172)||(30597238-30597285)
chr7 (121-219)||(32414608-32414703)
chr7 (129-172)||(6845154-6845197)
[»] chr4 (1 HSPs)
chr4 (121-222)||(52187768-52187866)
[»] chr2 (4 HSPs)
chr2 (119-172)||(43866602-43866655)
chr2 (122-171)||(7228305-7228354)
chr2 (116-169)||(43863126-43863179)
chr2 (185-222)||(38990043-38990080)
[»] chr1 (1 HSPs)
chr1 (121-172)||(14287949-14288000)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 33957480 - 33957682
Alignment:
Q  13 tttaaaaagttgttggaagtacctgaagtcaaccttttttgcagaagttgagttttgaagcaaaaagtccatggcaggcaccaatggaggacgtatggac 112  Q
    ||||||||||||||||||| |||||||||||||||||   || |||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  33957480 tttaaaaagttgttggaagcacctgaagtcaaccttt---gccgaaggtgagttttgaagcaaaaattccatggcaggcaccaatggaggacgtctggac 33957576  T
Q  113 tgattaaatttcagtaacttcaagttacacaaggaagggaactcaagcttcaataaatcatcatgagtgcaggaaagaacctaagcaatcatgaagtatt 212  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33957577 tgattaaatttcagtaacttcaagttacactaggaagggaactcaagcttcaataaatcatcatgagtgcaggaaagaacctaagcaatcatgaagtatt 33957676  T
Q  213 aggatc 218  Q
    ||||||    
T  33957677 aggatc 33957682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 25216946 - 25216905
Alignment:
Q  129 acttcaagttacacaaggaagggaactcaagcttcaataaat 170  Q
    ||||||||||| |||||| ||||||||||| |||||||||||    
T  25216946 acttcaagttatacaaggtagggaactcaaccttcaataaat 25216905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 25281101 - 25281060
Alignment:
Q  129 acttcaagttacacaaggaagggaactcaagcttcaataaat 170  Q
    ||||||||||| |||||| ||||||||||| |||||||||||    
T  25281101 acttcaagttatacaaggtagggaactcaaccttcaataaat 25281060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 6474 - 6267
Alignment:
Q  13 tttaaaaagttgttggaagtacctgaagtcaaccttttttgcagaagttgagttttgaagcaaaaagtccatggcaggcaccaatggaggacgtatggac 112  Q
    ||||||||||||||||||| |||||||||||||||||   ||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||  |    
T  6474 tttaaaaagttgttggaagcacctgaagtcaaccttt---gcagaaggtgagttttgaagcaaaaagtcaatgacagtcaccaatggaggacgtatgatc 6378  T
Q  113 tgattaaatttcagtaacttcaagttacacaaggaagggaactcaagcttcaataaatcatcatgagtgcaggaaagaacctaagcaatcatgaagtatt 212  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||| ||||||| | ||||||||||||||||||||||||||||||    
T  6377 tgattaaatttcagtgacttcaagttacacaaggaagggaagtcaaccttcaataaatcgtcatgagcgtaggaaagaacctaagcaatcatgaagtatt 6278  T
Q  213 aggatcagttg 223  Q
    |||||||||||    
T  6277 aggatcagttg 6267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 26292092 - 26291885
Alignment:
Q  13 tttaaaaagttgttggaagtacctgaagtcaaccttttttgcagaagttgagttttgaagcaaaaagtccatggcaggcaccaatggaggacgtatggac 112  Q
    ||||||||||||||||||| |||||||||||||||||   ||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||  |    
T  26292092 tttaaaaagttgttggaagcacctgaagtcaaccttt---gcagaaggtgagttttgaagcaaaaagtcaatgacagtcaccaatggaggacgtatgatc 26291996  T
Q  113 tgattaaatttcagtaacttcaagttacacaaggaagggaactcaagcttcaataaatcatcatgagtgcaggaaagaacctaagcaatcatgaagtatt 212  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||| ||||||| | ||||||||||||||||||||||||||||||    
T  26291995 tgattaaatttcagtgacttcaagttacacaaggaagggaagtcaaccttcaataaatcctcatgagcgtaggaaagaacctaagcaatcatgaagtatt 26291896  T
Q  213 aggatcagttg 223  Q
    |||||||||||    
T  26291895 aggatcagttg 26291885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 26305349 - 26305142
Alignment:
Q  13 tttaaaaagttgttggaagtacctgaagtcaaccttttttgcagaagttgagttttgaagcaaaaagtccatggcaggcaccaatggaggacgtatggac 112  Q
    ||||||||||||||||||| |||||||||||||||||   ||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||  |    
T  26305349 tttaaaaagttgttggaagcacctgaagtcaaccttt---gcagaaggtgagttttgaagcaaaaagtcaatgacagtcaccaatggaggacgtatgatc 26305253  T
Q  113 tgattaaatttcagtaacttcaagttacacaaggaagggaactcaagcttcaataaatcatcatgagtgcaggaaagaacctaagcaatcatgaagtatt 212  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||| ||||||| | ||||||||||||||||||||||||||||||    
T  26305252 tgattaaatttcagtgacttcaagttacacaaggaagggaagtcaaccttcaataaatcctcatgagcgtaggaaagaacctaagcaatcatgaagtatt 26305153  T
Q  213 aggatcagttg 223  Q
    |||||||||||    
T  26305152 aggatcagttg 26305142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 26338704 - 26338497
Alignment:
Q  13 tttaaaaagttgttggaagtacctgaagtcaaccttttttgcagaagttgagttttgaagcaaaaagtccatggcaggcaccaatggaggacgtatggac 112  Q
    ||||||||||||||||||| |||||||||||||||||   ||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||  |    
T  26338704 tttaaaaagttgttggaagcacctgaagtcaaccttt---gcagaaggtgagttttgaagcaaaaagtcaatgacagtcaccaatggaggacgtatgatc 26338608  T
Q  113 tgattaaatttcagtaacttcaagttacacaaggaagggaactcaagcttcaataaatcatcatgagtgcaggaaagaacctaagcaatcatgaagtatt 212  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||| ||||||| | ||||||||||||||||||||||||||||||    
T  26338607 tgattaaatttcagtgacttcaagttacacaaggaagggaagtcaaccttcaataaatcctcatgagcgtaggaaagaacctaagcaatcatgaagtatt 26338508  T
Q  213 aggatcagttg 223  Q
    |||||||||||    
T  26338507 aggatcagttg 26338497  T

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Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 8032349 - 8032450
Alignment:
Q  119 aatttcagtaacttcaagttacacaaggaagggaactcaagcttcaataaatcatcatgagtgcaggaaagaacctaagcaatcatgaagtattaggatc 218  Q
    ||||||||| |||||||||||| ||||||||||||||||| | |||||||||||| ||   | |||||||||||||||||||||||||||||||||||||    
T  8032349 aatttcagtgacttcaagttacgcaaggaagggaactcaaccgtcaataaatcataat---ttcaggaaagaacctaagcaatcatgaagtattaggatc 8032445  T
Q  219 agttg 223  Q
    |||||    
T  8032446 agttg 8032450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 1205352 - 1205264
Alignment:
Q  129 acttcaagttacacaaggaagggaactcaagcttcaataaatcatcatgagtgcaggaaagaacctaagcaatcatgaagtattaggatcag 220  Q
    ||||||||| |||||||||||||||||||| ||  ||||||  ||   ||  || |||||||||||||||||||| ||||||||| ||||||    
T  1205352 acttcaagtaacacaaggaagggaactcaacctcaaataaactat---gaaagcgggaaagaacctaagcaatcaggaagtattaagatcag 1205264  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 1303750 - 1303838
Alignment:
Q  129 acttcaagttacacaaggaagggaactcaagcttcaataaatcatcatgagtgcaggaaagaacctaagcaatcatgaagtattaggatcag 220  Q
    ||||||||| |||||||||||||||||||| ||  ||||||  ||   ||  || |||||||||||||||||||| ||||||||| ||||||    
T  1303750 acttcaagtaacacaaggaagggaactcaacctcaaataaactat---gaaagcgggaaagaacctaagcaatcaggaagtattaagatcag 1303838  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 24104122 - 24104158
Alignment:
Q  187 aagaacctaagcaatcatgaagtattaggatcagttg 223  Q
    ||||||||||||||||| |||||||||||||||||||    
T  24104122 aagaacctaagcaatcaagaagtattaggatcagttg 24104158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 7034180 - 7034141
Alignment:
Q  183 aggaaagaacctaagcaatcatgaagtattaggatcagtt 222  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  7034180 aggaaagaacctaagccatcaggaagtattaggatcagtt 7034141  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 30597238 - 30597285
Alignment:
Q  125 agtaacttcaagttacacaaggaagggaactcaagcttcaataaatca 172  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||    
T  30597238 agtaacttcaagttacacaaggaatggaactcaaccttcaataaatca 30597285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 32414703 - 32414608
Alignment:
Q  121 tttcagtaacttcaagttacacaaggaagggaactcaagcttcaataaatcatcatgagtgcaggaaagaacctaagcaatcatgaagtattaggatca 219  Q
    ||||||| |||||||||||||||||||||| ||||  | |||||||||   |||| ||    |||||||||||||| |||||| |||| ||||||||||    
T  32414703 tttcagtgacttcaagttacacaaggaaggcaacttcaccttcaataa---atcaggaaccaaggaaagaacctaatcaatcaggaagaattaggatca 32414608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 6845197 - 6845154
Alignment:
Q  129 acttcaagttacacaaggaagggaactcaagcttcaataaatca 172  Q
    ||||||| |||||||||||| ||||||||| |||||||||||||    
T  6845197 acttcaaattacacaaggaatggaactcaaccttcaataaatca 6845154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 52187866 - 52187768
Alignment:
Q  121 tttcagtaacttcaagttacacaaggaagggaactcaagcttcaataaatcatcatgagtgcaggaaagaacctaagcaatcatgaagtattaggatcag 220  Q
    ||||||| |||||||| ||||||||||| ||||||||| |||||||||   |||| ||    | ||||||||||||||||||| ||||||||| ||||||    
T  52187866 tttcagtgacttcaaggtacacaaggaatggaactcaaccttcaataa---atcaggaactaaagaaagaacctaagcaatcaagaagtattacgatcag 52187770  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 43866602 - 43866655
Alignment:
Q  119 aatttcagtaacttcaagttacacaaggaagggaactcaagcttcaataaatca 172  Q
    ||||||||  ||||||||||| |||||||||||||||||| |||||||||||||    
T  43866602 aatttcagcgacttcaagttaaacaaggaagggaactcaaccttcaataaatca 43866655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 7228354 - 7228305
Alignment:
Q  122 ttcagtaacttcaagttacacaaggaagggaactcaagcttcaataaatc 171  Q
    |||||| | ||||||||| ||||||||||||||||||| |||||||||||    
T  7228354 ttcagtgatttcaagttatacaaggaagggaactcaaggttcaataaatc 7228305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 43863126 - 43863179
Alignment:
Q  116 ttaaatttcagtaacttcaagttacacaaggaagggaactcaagcttcaataaa 169  Q
    |||| ||||||| |||||||||||||||||||||||| ||| | ||||||||||    
T  43863126 ttaattttcagtgacttcaagttacacaaggaagggagctctaccttcaataaa 43863179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 38990080 - 38990043
Alignment:
Q  185 gaaagaacctaagcaatcatgaagtattaggatcagtt 222  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  38990080 gaaagaacctaagcaatcaggaagtattacgatcagtt 38990043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 14287949 - 14288000
Alignment:
Q  121 tttcagtaacttcaagttacacaaggaagggaactcaagcttcaataaatca 172  Q
    ||||||| ||||||| |||| ||| ||||||||||||| |||||||||||||    
T  14287949 tttcagtgacttcaaattacgcaaagaagggaactcaatcttcaataaatca 14288000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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