View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8831_low_25 (Length: 237)

Name: NF8831_low_25
Description: NF8831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8831_low_25
NF8831_low_25
[»] chr4 (2 HSPs)
chr4 (1-83)||(51814676-51814758)
chr4 (175-224)||(51814540-51814589)
[»] chr2 (1 HSPs)
chr2 (25-83)||(18715851-18715909)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 51814758 - 51814676
Alignment:
Q  1 tctgaaccacacctctctttgcgttcatccatcattatttgacttgaacgacactctgtgctacaaaatgctttctcacctct 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51814758 tctgaaccacacctctctttgcgttcatccatcattatttgacttgaacgacactctgtgctacaaaatgctttctcacctct 51814676  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 51814589 - 51814540
Alignment:
Q  175 ttagattgatcaatacctgtacatgtaaacatcttctccatgaagattct 224  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  51814589 ttagattgatcaatacctgtacatgtaaacatcttttccatgaagattct 51814540  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 18715851 - 18715909
Alignment:
Q  25 tcatccatcattatttgacttgaacgacactctgtgctacaaaatgctttctcacctct 83  Q
    |||||||||||||||||  |||||||||||||  |||||||||||||| |||| |||||    
T  18715851 tcatccatcattatttgctttgaacgacactcattgctacaaaatgctatctcccctct 18715909  T

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