View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8831_low_26 (Length: 225)
Name: NF8831_low_26
Description: NF8831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8831_low_26 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 54703713 - 54703937
Alignment:
| Q |
3 |
tgaaatgtgtgtgcaccatttt--gaaaagtctgccatgttaataaactatcagatccagcttgatgtgactttccaacggcccgatccacatcgagaat |
100 |
Q |
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| T |
54703713 |
tgaaatgtgtgtgcactattttctgaaaagtctgccatgttaataaactatcagatccagcttgatgtgactttccaatggcccgatccacgtcgagaat |
54703812 |
T |
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| Q |
101 |
attagcaacccgttcaagaccaccatgcagtgcactacagtagcggatgatatgcttcatatcatacactttacttccaaataattctctcaaaattttc |
200 |
Q |
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| T |
54703813 |
attagcaacccgttcaagaccaccatgtagtgcactacagtagcggatgatatacttcatatcatacactttacttccaaataattctctcaaaaatttc |
54703912 |
T |
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| Q |
201 |
aaaaagtcttccaagctattcggga |
225 |
Q |
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| T |
54703913 |
aaaaagtcttccaagctattcggga |
54703937 |
T |
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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 42679011 - 42678817
Alignment:
| Q |
24 |
tgaaaagtctgccatgttaataaactatcagatccagcttgatgtgactttccaacggcccgatccacatcgagaatattagcaacccgttcaagaccac |
123 |
Q |
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| T |
42679011 |
tgaaaagtctgcgatgtcaacaaactgtcggatccagcttgatggcacttaccaatggcccgatccacatgaagaatactcgcaacttgttcaagaccgc |
42678912 |
T |
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| Q |
124 |
catgcagtgcactacagtagcggatgatatgcttcatatcatacactttacttccaaataattctctcaaaattttcaaaaagtcttccaagcta |
218 |
Q |
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| T |
42678911 |
cataaagtgcatttgaatagcgaatcatatacttgatatcatacacattccttccaaataattctctcaaaacatgcaaaaactctttcaagcta |
42678817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 18949532 - 18949697
Alignment:
| Q |
3 |
tgaaatgtgtgtgcacca--ttttgaaaagtctgccatgttaataaactatcagatccagcttgatgtgactttccaacggcccgatccacatcgagaat |
100 |
Q |
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| T |
18949532 |
tgaaatgtgtttgcaccaacttatcaaaagtgtgccatgtcaacaagctatcggatccagattgatgacactttccaacaacccgatccaccttgagtgt |
18949631 |
T |
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| Q |
101 |
attagcaacccgttcaagaccaccatgcagtgcactacagtagcggatgatatgcttcatatcata |
166 |
Q |
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| T |
18949632 |
acttgcaacccgatcaagaccaccatacaatgcattgctgtagcggatcatgtgtttcatatcata |
18949697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 40871675 - 40871721
Alignment:
| Q |
33 |
tgccatgttaataaactatcagatccagcttgatgtgactttccaac |
79 |
Q |
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| T |
40871675 |
tgccatgtcaacaaactatctgatccagcttgatgcgactttccaac |
40871721 |
T |
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