View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8831_low_4 (Length: 433)
Name: NF8831_low_4
Description: NF8831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8831_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 14 - 422
Target Start/End: Original strand, 7218266 - 7218672
Alignment:
| Q |
14 |
gacatcactctcctgaattccatcgaggagatgtgtaatcgatgcaattataagggttagttactgaatcacaccttattcaatgttttcatcttttttg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7218266 |
gacatcactctcctgaattccatcgaggagatgtgtaatcgatgcaattataagggttagttactgaatcacaccttattcaatgttttcatcttttttg |
7218365 |
T |
|
| Q |
114 |
gtaaaaattcttacttttatatgttttcatgtttctttattctgatattgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgtt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7218366 |
gtaaaaattcttacttttatatgttttcatgtttctttattctgatattgtttatttcagttaccaaatgtagcatggcttctgatgccttcaacatgtt |
7218465 |
T |
|
| Q |
214 |
ggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacatt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7218466 |
ggaaagaaaggactgtttcgatgtaatgttgattgatcctcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacatt |
7218565 |
T |
|
| Q |
314 |
cctgtcattagtaagaatttattcaactttacacaattcacatgattcattcatatatatgtacctcataagtgtgaacttacattattatttctttttt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
7218566 |
cctgtcattagtaagaatttattcaactttacacaattcacatgattcattc--atatatgtacttaataagtgtgaacttacattattatttctttttt |
7218663 |
T |
|
| Q |
414 |
gtagtgatg |
422 |
Q |
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||||||||| |
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| T |
7218664 |
gtagtgatg |
7218672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 161 - 408
Target Start/End: Complemental strand, 7317650 - 7317403
Alignment:
| Q |
161 |
ttgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgc |
260 |
Q |
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||||||||||||||||||||||| | || |||||||||||||| || | ||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
7317650 |
ttgtttatttcagttaccaaatgcaatacagcttctgatgccttgaattcgatggaaagaaaggactgttttgatgtaatgttgattgatgctcatatgc |
7317551 |
T |
|
| Q |
261 |
caaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacacaattcacatgatt |
360 |
Q |
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|||||||||||| |||||||||||||||| |||| ||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7317550 |
caaacatggatgtttatgactttgtccaacatgttaccctactactcaaaattcctgtcattagtaagaatttcttcaactttacacaattcacatgatt |
7317451 |
T |
|
| Q |
361 |
cattcatatatatgtacctcataagtgtgaacttacattattatttct |
408 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
7317450 |
cattcatatatatgtacttaataagtgtgaacttacattattatttct |
7317403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 164 - 347
Target Start/End: Original strand, 7243922 - 7244105
Alignment:
| Q |
164 |
tttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgccaa |
263 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7243922 |
tttatttcagttaccaaatgtaacacagcttctgatgccttgaacttgttggaaagaaaggactgtttcgatgtaatgttgattgatcctcatatgccaa |
7244021 |
T |
|
| Q |
264 |
acatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacac |
347 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7244022 |
acatggatgcttatgactttgtccaacatgttaccctacaactcaacattcctgtcattagtaagaatttattcaactttacac |
7244105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 8161980 - 8162314
Alignment:
| Q |
14 |
gacatcactctcctgaattccatcgaggagatgtgtaatcgatgcaattataagggttagttactgaatcacaccttattcaatgttttcatcttttttg |
113 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||||| |||||||| || || | ||||||||||| |
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|
| T |
8161980 |
gacatcactctccttaattccatcgaggagatgtgtaatcgatgcaattatcaaggttaggtactgaatcataccttatttaaagtatccatcttttttg |
8162079 |
T |
|
| Q |
114 |
gtaaaaat-tcttacttttatatgttttcatgtttctttattctgatattgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgt |
212 |
Q |
| |
|
|||||||| ||||||||| || ||||||||||||| ||||| | |||||||| | |||||||||||||| | ||||||||||||| || | ||| |
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| T |
8162080 |
gtaaaaatatcttactttaatttgttttcatgtttgtttatctttttattgtttggattagttaccaaatgtaatgtggcttctgatgcattggatttgt |
8162179 |
T |
|
| Q |
213 |
tgga-aagaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaaca |
311 |
Q |
| |
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|||| || |||| ||||||||||||||||||||||||| ||| |||||||||||||||||| | ||||||||||||| |||| ||||||||| | | |
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| T |
8162180 |
tggacaaaaaagtgctgtttcgatgtaatgttgattgatgctcgtatgccaaacatggatgcctgtgactttgtccaacatgtttccctacaacttcaga |
8162279 |
T |
|
| Q |
312 |
ttcctgtcattagtaagaatttattcaactttaca |
346 |
Q |
| |
|
|||||| || |||||||||||||| ||||||||| |
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| T |
8162280 |
ttcctgctatcagtaagaatttatttaactttaca |
8162314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 161 - 344
Target Start/End: Complemental strand, 7324439 - 7324256
Alignment:
| Q |
161 |
ttgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgc |
260 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||||||| || || ||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
7324439 |
ttgtttatttcagttaccaaatgcaattcagcttctgatgctttgtacttgttggaaagaaaggactgttatgatgtaatgttgattgatgctcatatgc |
7324340 |
T |
|
| Q |
261 |
caaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaacttta |
344 |
Q |
| |
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| |||||||||| |||||||||||||||| || | ||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
7324339 |
cgaacatggatgtctatgactttgtccaaaatgctaccctacaactcaacattcctgttattagtaagaatttcttcaacttta |
7324256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 7244127 - 7244202
Alignment:
| Q |
350 |
ttcacatgattcattcatatatat---gtacctcataagtgtgaacttacattattatttcttttttgtagtgatg |
422 |
Q |
| |
|
|||| ||||||||||||||||||| || |||| ||||||| ||| |||||||||||||||||||||||||||| |
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|
| T |
7244127 |
ttcatatgattcattcatatatatattgttactcagaagtgtggactgacattattatttcttttttgtagtgatg |
7244202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 422
Target Start/End: Complemental strand, 7324222 - 7324160
Alignment:
| Q |
360 |
tcattcatatatatgtacctcataagtgtgaacttacattattatttcttttttgtagtgatg |
422 |
Q |
| |
|
|||||||||| ||||||| | | ||| ||||||| ||||||||||||||| ||| |||||||| |
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|
| T |
7324222 |
tcattcatatttatgtacttaagaagcgtgaactgacattattatttcttatttttagtgatg |
7324160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 422
Target Start/End: Original strand, 8162379 - 8162415
Alignment:
| Q |
386 |
tgtgaacttacattattatttcttttttgtagtgatg |
422 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||| |
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|
| T |
8162379 |
tgtgaactcacattattatttgttttttgtagtgatg |
8162415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 161 - 344
Target Start/End: Complemental strand, 22766478 - 22766295
Alignment:
| Q |
161 |
ttgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgc |
260 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||| ||||| ||| |||||||||||||||||||||| ||||||||||| |||||| ||||||||| |
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| T |
22766478 |
ttgtttatttcagttaccaaatgcaatacagcttctgaagccttgaacttgttggaaagaaaggactgttttgatgtaatgttaattgatgctcatatgc |
22766379 |
T |
|
| Q |
261 |
caaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaacttta |
344 |
Q |
| |
|
||||||||||||| ||||| ||||| ||| || | | |||||||| |||||||| ||||||||| |||| |||||||||| |
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| T |
22766378 |
caaacatggatgcctatgattttgttcaacatgctaccggtcaactcaatattcctgttattagtaagtatttcttcaacttta |
22766295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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