View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8831_low_5 (Length: 379)

Name: NF8831_low_5
Description: NF8831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8831_low_5
NF8831_low_5
[»] chr7 (2 HSPs)
chr7 (31-355)||(31871867-31872171)
chr7 (198-285)||(23365284-23365372)
[»] chr5 (5 HSPs)
chr5 (194-355)||(14395249-14395410)
chr5 (198-286)||(13208700-13208789)
chr5 (198-289)||(2707443-2707533)
chr5 (198-261)||(34064854-34064917)
chr5 (245-334)||(13209247-13209334)
[»] chr3 (1 HSPs)
chr3 (198-286)||(42153169-42153258)
[»] scaffold0085 (1 HSPs)
scaffold0085 (198-286)||(39096-39184)
[»] chr8 (2 HSPs)
chr8 (198-289)||(29703435-29703526)
chr8 (198-249)||(5664264-5664315)
[»] chr4 (4 HSPs)
chr4 (198-258)||(56459730-56459790)
chr4 (196-286)||(4782517-4782608)
chr4 (197-263)||(30765435-30765501)
chr4 (199-243)||(19330200-19330244)
[»] chr1 (2 HSPs)
chr1 (198-258)||(19402353-19402413)
chr1 (199-243)||(45817318-45817362)
[»] chr2 (1 HSPs)
chr2 (198-262)||(30874719-30874782)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 31 - 355
Target Start/End: Original strand, 31871867 - 31872171
Alignment:
Q  31 gagttcagagttcagagcccatgaatgaatctcttatcgagnnnnnnnnnnnnnttttc---cctcacatacgttgtgctgttgttgttataggataaaa 127  Q
    |||||||||||||||||||||||||||||||||||||||||             ||||    |||||||||||||||  |||||||||||||||||||||    
T  31871867 gagttcagagttcagagcccatgaatgaatctcttatcgagtctctatgtttttttttttttcctcacatacgttgtcttgttgttgttataggataaaa 31871966  T
Q  128 gggtcattttctattatccacaaatttatattcgattacagggcatttctggtgagaatgagttatttatttatgtgagaatggtaagaacagttatcaa 227  Q
    |||||||||||| |||||||||||||||||| |||||| ||||||| ||| || ||||||||||||||||||||||||||||                      
T  31871967 gggtcattttcttttatccacaaatttatatccgattagagggcatatctagtaagaatgagttatttatttatgtgagaat------------------ 31872048  T
Q  228 cctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattctataaaaattcatgaacccatatacgcttctttgttcttcg 327  Q
        ||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| |||| |||||||||||||||    
T  31872049 ----tagataaaaaatgaatggaccagattaaaagcttaacatgtatttctgcctattctataaaaattcatgaacccacatac-cttctttgttcttcg 31872143  T
Q  328 cgttccaataccaagcttatctctacgt 355  Q
    ||||||||||||||||||||||||||||    
T  31872144 cgttccaataccaagcttatctctacgt 31872171  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 23365372 - 23365284
Alignment:
Q  198 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagatt-aaaagcttaacatgtgtttcaccctatt 285  Q
    |||||||||||| || |||||| ||| |||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||    
T  23365372 ttatgtgagaattgtgagaacacttaccaacctttagataaaaaatgaatgaaccagattaaaaagcttcacatgtgtctcaccctatt 23365284  T

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Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 194 - 355
Target Start/End: Complemental strand, 14395410 - 14395249
Alignment:
Q  194 ttatttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattctataaaa 293  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  14395410 ttatttatgtgagaatggtgagaacacttatcaacctttggataaaaaatgaatggaccagattaaaaacttaacatgagtttcaccctattctataaaa 14395311  T
Q  294 attcatgaacccatatacgcttctttgttcttcgcgttccaataccaagcttatctctacgt 355  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  14395310 attcatgaacccacctacgcttctttgttcttcgcgttccaataccaagcttatctctacgt 14395249  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 13208700 - 13208789
Alignment:
Q  198 ttatgtgagaatggtaagaacagttatcaacctttagataaaa-aatgaatggaccagattaaaagcttaacatgtgtttcaccctattc 286  Q
    ||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||    
T  13208700 ttatgtgagaatggtgagaacacttatcaacctttagataaaaaaatgaatggaccagattaaaagcttcacatgtgtctcaccctattc 13208789  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 289
Target Start/End: Original strand, 2707443 - 2707533
Alignment:
Q  198 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattctat 289  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||| ||||| ||||||||||||  | |||||||| | | ||||||||||    
T  2707443 ttatatgagaatggtgagaacc-ttatcaacctttagataaaaaataaatggtccagattaaaaggctcacatgtgtcttaacctattctat 2707533  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 34064917 - 34064854
Alignment:
Q  198 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaa 261  Q
    |||| |||||||||| |||||| |||||||||||||||| |||||| ||||| | |||||||||    
T  34064917 ttatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtctagattaaaa 34064854  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 334
Target Start/End: Complemental strand, 13209334 - 13209247
Alignment:
Q  245 aatggaccagattaaaagcttaacatgtgtttcaccctattctataaaaattcatgaacccatatacgcttctttgttcttcgcgttcca 334  Q
    |||||| |||||||||||||| |||||||| ||||||||||| || ||  |||||||||||  | || ||||||||||||| | ||||||    
T  13209334 aatggatcagattaaaagcttcacatgtgtctcaccctattcaatcaattttcatgaaccc--acacacttctttgttctttgtgttcca 13209247  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 42153169 - 42153258
Alignment:
Q  198 ttatgtgagaatggtaagaacagttatcaaccttt-agataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattc 286  Q
    ||||||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  42153169 ttatgtgagaatggtgagaacacttatcagccttttagataaaaaatgaatggaccagattaaaagcttatcatgtgtctcaccctattc 42153258  T

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Target: scaffold0085 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 39096 - 39184
Alignment:
Q  198 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattc 286  Q
    ||||||||||| | | |||||| || |||  ||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||    
T  39096 ttatgtgagaacgatgagaacacttgtcagtctttagataaaaaatgaatggaccagattaaaaacttcacatgtgtctcaccctattc 39184  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 29703526 - 29703435
Alignment:
Q  198 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagcttaacatgtgtttcaccctattctat 289  Q
    ||||||||||||||| |||||| |||||||||||||||| |||||| ||||| | | ||||||| ||| |||||||| ||| ||||||||||    
T  29703526 ttatgtgagaatggtgagaacacttatcaacctttagatcaaaaattaatggtctaaattaaaaacttcacatgtgtctcatcctattctat 29703435  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 5664315 - 5664264
Alignment:
Q  198 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatgg 249  Q
    |||| |||||||||| |||||| |||||||||||||||| |||||| |||||    
T  5664315 ttatatgagaatggtgagaacacttatcaacctttagatgaaaaataaatgg 5664264  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 56459790 - 56459730
Alignment:
Q  198 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagatta 258  Q
    |||| |||||||||| |||||| |||||||||||||||| |||||| ||||| ||||||||    
T  56459790 ttatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagatta 56459730  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 286
Target Start/End: Complemental strand, 4782608 - 4782517
Alignment:
Q  196 atttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagatt-aaaagcttaacatgtgtttcaccctattc 286  Q
    ||||||||||||||||| |||||| |||||||  |||| ||||||| |||| ||| |||||| ||||| || |||||||| ||| |||||||    
T  4782608 atttatgtgagaatggtgagaacacttatcaatttttaaataaaaattgaaaggatcagattaaaaagtttcacatgtgtctcatcctattc 4782517  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 30765501 - 30765435
Alignment:
Q  197 tttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaagc 263  Q
    ||||||| |||||||| |||| | |||||||||||||||| |||||  | ||| |||||||||||||    
T  30765501 tttatgtaagaatggtgagaatacttatcaacctttagatcaaaaacaagtggtccagattaaaagc 30765435  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 19330244 - 19330200
Alignment:
Q  199 tatgtgagaatggtaagaacagttatcaacctttagataaaaaat 243  Q
    ||||||||||||||| ||||| ||||||||| |||||| ||||||    
T  19330244 tatgtgagaatggtaggaacaattatcaaccattagattaaaaat 19330200  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 19402353 - 19402413
Alignment:
Q  198 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagatta 258  Q
    |||| |||||||||| |||||| |||||||||||||||| |||||| ||||| ||||||||    
T  19402353 ttatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagatta 19402413  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 45817318 - 45817362
Alignment:
Q  199 tatgtgagaatggtaagaacagttatcaacctttagataaaaaat 243  Q
    ||||||||||||||| ||||| ||||||||| |||||| ||||||    
T  45817318 tatgtgagaatggtaggaacaattatcaaccattagattaaaaat 45817362  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 30874719 - 30874782
Alignment:
Q  198 ttatgtgagaatggtaagaacagttatcaacctttagataaaaaatgaatggaccagattaaaag 262  Q
    ||||||||||||| |||||| | ||||||||||||||||  |||||||||||   ||||||||||    
T  30874719 ttatgtgagaatgataagaataattatcaacctttagat-taaaatgaatggttaagattaaaag 30874782  T

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