View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8831_low_6 (Length: 379)
Name: NF8831_low_6
Description: NF8831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8831_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 36502840 - 36503202
Alignment:
| Q |
1 |
acaaaataataatttgattacataaaaatcacaaagtgcgagtaaatgtcagacacttagacacgccttcaatataaagtgacgatgcaatatagctact |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36502840 |
acaaaataataatttgattacatacaaatcacaaagtgcgagtaaatgtcagacacttagacacgccttcaatataaagtgacgatgcaatatagctact |
36502939 |
T |
|
| Q |
101 |
caggtagcaatacaagataaagcagcaaactttaagttggtaaagtaatgtgtacaagctacaaaccaaaacccagataatagaaattcataaactggtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36502940 |
caggtagcaatacaagataaagcagcaaactttaagttggtaaagtaatgtgtacaagctacaaaccaaaacccagataatagaaattcataaactggtc |
36503039 |
T |
|
| Q |
201 |
taagatga--aggnnnnnnnnntcaaaattttgatgtggatgaacattgatgatacctgccaggtatcttgagaccaacggttgcgaccagtatcaagaa |
298 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36503040 |
taagatgaagagagaaaaaaaatcaaaattttgatgtggatgaacattgatgatacctgccaggtatcttgagaccaacggttgcgaccagtatcaagaa |
36503139 |
T |
|
| Q |
299 |
agtcatcattgacaatctgccaagcttcctgaacaagtccttcattggtaacaacttcaggag |
361 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36503140 |
agtcatcatcgacaatctgccaagcttcctgaacaagtccttcattggtaacaacttcaggag |
36503202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University