View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8832_low_1 (Length: 680)
Name: NF8832_low_1
Description: NF8832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8832_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 579; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 19 - 675
Target Start/End: Original strand, 4167686 - 4168350
Alignment:
| Q |
19 |
gatacagccatgaacgtgaacataaaagatttctcaattattaacttgttg-------gaagccaattccatgtctctctgtaggaaatgtaacgaaaag |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4167686 |
gatacagccatgaacgtgaacataaaagatttctcaattattaacttgttgaaagggggaagccaattccatgtctctctgtaggaaatgtaacgaaaag |
4167785 |
T |
|
| Q |
112 |
catgctgcaaaaaacgccaattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagcaattcaccacattcagatca |
211 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4167786 |
catgctgcaaaaatcgccaattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagcaattcaccacattccgatca |
4167885 |
T |
|
| Q |
212 |
aacaatgcaattgctgcaaacaccagaattgacatcattgcatgcatgaaatctataaactttatgcgatattttgcagcaacttgaggtggaagtttgg |
311 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |||||| ||||| ||||||||||||||||||||||||| |
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| T |
4167886 |
aacaatgcaattgctgcaaacaccagaattgacattactgcatgcataaaatctataaaccgtatgcggtatttagcagcaacttgaggtggaagtttgg |
4167985 |
T |
|
| Q |
312 |
ttgatccatcaataacccacaagcccttaaaggtggaaaacccataaataatattacccttgctgtctctaaagctatcagtaaagcttagcagaaagca |
411 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4167986 |
ttgatccatcaataacccacaagcccttaaaggtggcaaacccataaataatattacccttgctgtctctaaagctatcagtaaagcttagcagaaagca |
4168085 |
T |
|
| Q |
412 |
tgatgcaccacagagagtcacaagtgcagcagtcatccacttgctgacagagtcacagctgccaata-ttgtaaagattggtgataaaagttgtaatgca |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4168086 |
tgatgcaccacagagagtcacaagtgcagcagtcatccacttgctgacagagtcacagctgccaatatttgtaaagattggtgataaaagttgtaatgca |
4168185 |
T |
|
| Q |
511 |
aggacagtgcctgtaggtagaaggtttgccaaatgtgccgtgctctgaaatgtcgaacttatagctgtttgtatcaagtttctctttgcttctggaacct |
610 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4168186 |
aggacagtgcctgtaggtagaaggtttgctaaatgtgccgtgctctgaaatgtcaaacttatagctgtttgtatcaagtttctctttgcttctggaacct |
4168285 |
T |
|
| Q |
611 |
ctgcatttagcagtagtggaaccttgtgttcatccttgttcttagaatcatcattgatgtccatc |
675 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4168286 |
ctgcatttagcagtagtggaaccttgtgttcatccttgttcttagaatcatcattgatgcccatc |
4168350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 37 - 664
Target Start/End: Original strand, 4178631 - 4179263
Alignment:
| Q |
37 |
aacataaaagatttctcaattattaacttgttggaag-------ccaattccatgtctctctgtaggaaatgtaacgaaaagcatgctgcaaaaaacgcc |
129 |
Q |
| |
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||||||||| | |||||||||||||||||||| ||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
4178631 |
aacataaaaaagatctcaattattaacttgttgaaagggggaacccaattccatgtctctcagtaggaaatgcaacgaaaagcatgctgcaaaaaacgcc |
4178730 |
T |
|
| Q |
130 |
aattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagcaattcaccacattcagatcaaacaatgcaattgctgca |
229 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4178731 |
aattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagcaattcaccacattctgatcaaacaatgcaattgctgca |
4178830 |
T |
|
| Q |
230 |
aacaccagaattgacatcattgcatgcatgaaatctataaactttatgcgatattttgcagcaacttgaggtggaagtttggttgatccatcaataaccc |
329 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4178831 |
aacaccagaattgacatcatcgcatgcatgaaatctataaactttatgcgatattttgcagcaacttgaggtggaagtttggttgatccatcaataaccc |
4178930 |
T |
|
| Q |
330 |
acaagcccttaaaggtggaaaacccataaataatattacccttgctgtctctaaagctatcagtaaagcttagcagaaagcatgatgcaccacagagagt |
429 |
Q |
| |
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|||||||||| ||||||| |||||||||| |||||| |||||||||||||| | |||||| |||||| ||||||| ||||||||||||||||| ||||| |
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|
| T |
4178931 |
acaagcccttgaaggtggcaaacccataacaaatattccccttgctgtctcttatgctatctgtaaagtttagcaggaagcatgatgcaccacatagagt |
4179030 |
T |
|
| Q |
430 |
cacaagtgcagcagtcatccacttgctgacagagtcacagctgccaata-ttgtaaagattggtgataaaagttgtaatgcaaggacagtgcctgtaggt |
528 |
Q |
| |
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||||||| ||| |||||| |||||| ||||||||||||| |||||| | ||||||| |||||||| |||||||| || || || ||||||||||||||| |
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| T |
4179031 |
cacaagtacagaagtcatggacttgcagacagagtcacagttgccaacatttgtaaaaattggtgacaaaagttggaaagccagaacagtgcctgtaggt |
4179130 |
T |
|
| Q |
529 |
agaaggtttgccaaatgtgccgtgctctgaaatgtcgaacttatagctgtttgtatcaagtttctctttgcttctggaacctctgcatttagcagtagtg |
628 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||||||||||||| | |||| || | | |||| ||||||||||||||| ||||| |||| |||| |
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| T |
4179131 |
agaaggtttgccaaatgcgccgtgctttgaaatgtcgaacttatagctttctgtaccaggctcctctctgcttctggaacctccgcattccgcaggagtg |
4179230 |
T |
|
| Q |
629 |
gaaccttgtgttcatccttgttcttagaatcatcat |
664 |
Q |
| |
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||||||| |||||||| ||||||||||||||||| |
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| T |
4179231 |
gaaccttttgttcatc---gttcttagaatcatcat |
4179263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 69 - 423
Target Start/End: Complemental strand, 34944727 - 34944373
Alignment:
| Q |
69 |
ggaagccaattccatgtctctctgtaggaaatgtaacgaaaagcatgctgcaaaaaacgccaattgccacaggcaacgccgtgaggatttcttgtatctc |
168 |
Q |
| |
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||||||||||||||||||| | |||||||||| ||| || |||||||| || ||||| |||||| | |||||||| || || ||||||| | ||||| |
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| T |
34944727 |
ggaagccaattccatgtctatgagtaggaaatgcaacaaacagcatgctacagaaaacaccaattccaacaggcaatgcagtaaggatttgacgcatctc |
34944628 |
T |
|
| Q |
169 |
ttttgatggttctggaaaaaagcaattcaccacattcagatcaaacaatgcaattgctgcaaacaccagaattgacatcattgcatgcatgaaatctata |
268 |
Q |
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| T |
34944627 |
atatgaaggtgatggaaagaaacagttaaccacattatgatcaaacattgcaatagctgaaaaaaccaaaattgacataattgcatgcatgaaatcaatg |
34944528 |
T |
|
| Q |
269 |
aactttatgcgatattttgcagcaacttgaggtggaagtttggttgatccatcaataacccacaagcccttaaaggtggaaaacccataaataatattac |
368 |
Q |
| |
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||| ||| ||||||||||| ||| || | |||||||| | | |||||||||||| | ||| ||||| ||||| |||| ||| |||||| || || | |
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| T |
34944527 |
aaccttagttgatattttgcatcaagttcatgtggaagtgtagctgatccatcaatgatccataagcctttaaatgtggcaaatccataacatatgttcc |
34944428 |
T |
|
| Q |
369 |
ccttgctgtctctaaagctatcagtaaagcttagcagaaagcatgatgcaccaca |
423 |
Q |
| |
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| || ||||| | ||||||||||| |||| ||| || |||||||| |||||||| |
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| T |
34944427 |
ctttattgtctttgaagctatcagtgaagcatagtaggaagcatgaggcaccaca |
34944373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 357
Target Start/End: Complemental strand, 34947880 - 34947771
Alignment:
| Q |
248 |
attgcatgcatgaaatctataaactttatgcgatattttgcagcaacttgaggtggaagtttggttgatccatcaataacccacaagcccttaaaggtgg |
347 |
Q |
| |
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||||||||||||||||| || ||| ||| ||||||||||| ||| || | |||||||| | | |||||||||||| | ||| ||||| ||||| |||| |
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|
| T |
34947880 |
attgcatgcatgaaatcaatcaaccttagttgatattttgcatcaagttcatgtggaagtgtagctgatccatcaatgatccataagcctttaaatgtgg |
34947781 |
T |
|
| Q |
348 |
aaaacccata |
357 |
Q |
| |
|
||| ||||| |
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|
| T |
34947780 |
caaatccata |
34947771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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