View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8832_low_3 (Length: 482)
Name: NF8832_low_3
Description: NF8832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8832_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 54383615 - 54383140
Alignment:
| Q |
1 |
ttctctgagaaaattgactatctaaaggacaaggtgcagccaacttttgtcaaagaacgtcggtccatgaaggtttgtattaatctattagaattgttgn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54383615 |
ttctctgagaaaattgactatctaaaggacaaggtgcagccaacttttgtcaaagaacgtcggtccatgaaggtttgtattaatctattagaattgttga |
54383516 |
T |
|
| Q |
101 |
nnnnnntatgaagttctgaaatcagtttaaagcttactcaccgactattaattggatgcatggcagagagaatatgaagagtttaaggttaggatcaatg |
200 |
Q |
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| T |
54383515 |
aaaaaa-atgaagttctgaaatcagtttaaagcttactcaccgactattaattggatgcatggcagagagaatatgaagagtttaaggttaggatcaatg |
54383417 |
T |
|
| Q |
201 |
cacttgtggcaaaagctcagaaggttcctgcaggagggtggattatgcaggatgggacaccatggccaggaaacaatactaaggatcatcctggtatgat |
300 |
Q |
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| T |
54383416 |
cacttgtggcaaaagctcagaaggttcctgcaggagggtggattatgcaggatgggacaccatggccaggaaacaatactaaggatcatcctggtatgat |
54383317 |
T |
|
| Q |
301 |
tcaagtctttcttggtcacagtggaggtcatgatagtgaaggaaaccagcttcctcgccttgtttatgtatctagagagaaaaggccaggatttcaacac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54383316 |
tcaagtctttcttggtcacagtggaggtcatgatagtgaaggaaaccagcttcctcgccttgtttatgtatctagagagaaaaggccaggatttcaacac |
54383217 |
T |
|
| Q |
401 |
cacaagaaagccggtgccatgaatgctctggtagagttacttgaacaaacagcttttgttatttttatgatgtccat |
477 |
Q |
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| T |
54383216 |
cacaagaaagccggtgccatgaatgctctggtagagttacttgaacaaacagattttgttatttttatgatgtccat |
54383140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 327
Target Start/End: Complemental strand, 26498455 - 26498292
Alignment:
| Q |
164 |
cagagagaatatgaagagtttaaggttaggatcaatgcacttgtggcaaaagctcagaaggttcctgcaggagggtggattatgcaggatgggacaccat |
263 |
Q |
| |
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|||||||||||||||||||||||||| || || ||||| |||||||| ||| || || ||||| ||| ||| |||| |||| |||||| ||||||| |
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| T |
26498455 |
cagagagaatatgaagagtttaaggtgagaataaatgcgcttgtggctaaatctatgagagttccatcagaaggttggagtatgaaggatgaaacaccat |
26498356 |
T |
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| Q |
264 |
ggccaggaaacaatactaaggatcatcctggtatgattcaagtctttcttggtcacagtggagg |
327 |
Q |
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| T |
26498355 |
ggccgggaaacaatacaaaagatcatccaagtatgatacaaatacttcttggtcacaatggagg |
26498292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 417
Target Start/End: Complemental strand, 35926251 - 35926151
Alignment:
| Q |
317 |
cacagtggaggtcatgatagtgaaggaaaccagcttcctcgccttgtttatgtatctagagagaaaaggccaggatttcaacaccacaagaaagccggtg |
416 |
Q |
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| T |
35926251 |
cacagtggtgctcgtgatatcgaaggaaatgaacttcctaggctagtttatgtttctagagagaaaagaccaggataccaacatcacaagaaagcaggtg |
35926152 |
T |
|
| Q |
417 |
c |
417 |
Q |
| |
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| |
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| T |
35926151 |
c |
35926151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 426
Target Start/End: Original strand, 14610652 - 14610716
Alignment:
| Q |
362 |
gtttatgtatctagagagaaaaggccaggatttcaacaccacaagaaagccggtgccatgaatgc |
426 |
Q |
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| T |
14610652 |
gtttatgtatctcgagagaagaggccaggttatgatcataacaagaaagccggtgccatgaatgc |
14610716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 426
Target Start/End: Complemental strand, 14597850 - 14597789
Alignment:
| Q |
365 |
tatgtatctagagagaaaaggccaggatttcaacaccacaagaaagccggtgccatgaatgc |
426 |
Q |
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| T |
14597850 |
tatgtatctcgagagaagaggccaggttatgatcacaacaagaaagctggtgccatgaatgc |
14597789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 437
Target Start/End: Complemental strand, 44377057 - 44376973
Alignment:
| Q |
353 |
cctcgccttgtttatgtatctagagagaaaaggccaggatttcaacaccacaagaaagccggtgccatgaatgctctggtagagt |
437 |
Q |
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| T |
44377057 |
cctcgtcttgtttatgtgtctcgtgaaaaaagacctggattcgaacaccacaaaaaagctggtgctatgaatgccttggtagagt |
44376973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 303
Target Start/End: Complemental strand, 44377329 - 44377190
Alignment:
| Q |
164 |
cagagagaatatgaagagtttaaggttaggatcaatgcacttgtggcaaaagctcagaaggttcctgcaggaggg-tggattatgcaggatgggacacca |
262 |
Q |
| |
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||||| || ||||||||||| || || ||||| |||||| | || |||| || || |||||||||| |||| || |||| ||||| ||||||||||| |
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| T |
44377329 |
cagagggactatgaagagttaaaagtgaggattaatgcattggttgcaatggcgcaaaaggttcctg-aggatggatggacaatgcaagatgggacacct |
44377231 |
T |
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| Q |
263 |
tggccaggaaacaatactaaggatcatcctggtatgattca |
303 |
Q |
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| T |
44377230 |
tggcctggaaacaatgtcaacgatcatcctggaatgattca |
44377190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 303
Target Start/End: Complemental strand, 49591937 - 49591798
Alignment:
| Q |
164 |
cagagagaatatgaagagtttaaggttaggatcaatgcacttgtggcaaaagctcagaaggttcctgcaggagggtggattatgcaggatgggacaccat |
263 |
Q |
| |
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|||||| |||||||||| || || || ||||||||||| |||||| |||||||||||| | || | | ||| |||| ||||||||||| || || | |
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| T |
49591937 |
cagagacaatatgaagaattcaaagtaaggatcaatgcctatgtggccaaagctcagaagatgccagaggaaggttggacaatgcaggatggaactcctt |
49591838 |
T |
|
| Q |
264 |
ggccaggaaacaatactaaggatcatcctggtatgattca |
303 |
Q |
| |
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|||| ||||| ||| | | |||||||||||| |||||||| |
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| T |
49591837 |
ggcctggaaataatcccagggatcatcctggaatgattca |
49591798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 1176980 - 1176888
Alignment:
| Q |
163 |
gcagagagaatatgaagagtttaaggttaggatcaatgcacttgtggcaaaagctcagaaggttcctgcaggagggtggattatgcaggatgg |
255 |
Q |
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|||||||||||||||||| ||||| ||||| || ||| | || || ||||| ||| |||||||||| | || |||||||| ||||| ||||| |
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| T |
1176980 |
gcagagagaatatgaagaatttaaagttagaataaattctctagttgcaaaggctaagaaggttccagaagaagggtggacaatgcaagatgg |
1176888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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