View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8833_low_2 (Length: 254)
Name: NF8833_low_2
Description: NF8833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8833_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 8353021 - 8353248
Alignment:
| Q |
21 |
tcatatcaatggctaagactactcctaaccacacacaaactgtatctggttgggcagctcatgattcttccggcaagattaccccatacaccttcaaaag |
120 |
Q |
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| T |
8353021 |
tcatatcaatggctaagactactcctaaccacacacaaactgtatctggttgggcagctcatgattcttccggcaagattaccccatacaccttcaaaag |
8353120 |
T |
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| Q |
121 |
aaggtaactatctatcttttatttcatgcattcttgtatatattgtagtacctttttgatcttaactcctcaatttcaatttcaatttcatgtattaagg |
220 |
Q |
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| T |
8353121 |
aaggtaactatcttttatttatttcatgcattcttgtatatattgtagtacctttttgatcttaactc------ttcaatttcaatttcatgtattaagg |
8353214 |
T |
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| Q |
221 |
gagaacggtggtactgatgtgactataaagatat |
254 |
Q |
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| T |
8353215 |
gagaacggtggtactgatgtgactataaagatat |
8353248 |
T |
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