View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8833_low_3 (Length: 237)
Name: NF8833_low_3
Description: NF8833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8833_low_3 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 50554829 - 50554592
Alignment:
| Q |
19 |
gtatcagcctcatgaaattgttgactggtatccgtaaactgtttatatagtgttgcattttccagtttcagtttttcaacctgagatatcaaaattcaaa |
118 |
Q |
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| T |
50554829 |
gtatcagcctcatgaaattgttgactggtatcagtaaactgtttatatagtgttgcattttccagtttcagtttttcaacctgagagatcaaaattcaaa |
50554730 |
T |
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| Q |
119 |
tgtgaagaaagtgatgactacttatg-------------------ctcacaaaagattatgctccaaaacattgactagttacctgagcctcaagttcag |
199 |
Q |
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| T |
50554729 |
tgggaagaaaatgatgactacttatgctgtttagctgttatacatctcacaaaagattatgctccaaaacattgactagttacctgagcctcaagttcag |
50554630 |
T |
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| Q |
200 |
acaaatgcgcttgttttctccaccttgacctcctggct |
237 |
Q |
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| T |
50554629 |
acaaatgcgcttgttttctccaccttgacctcctggct |
50554592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 50817451 - 50817326
Alignment:
| Q |
19 |
gtatcagcctcatgaaattgttgactggtatccgtaaactgtttatatagtgttgcattttccagtttcagtttttcaacctgagatatcaaaattcaaa |
118 |
Q |
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||||||||||| |||||||||||||| | ||||||||||||||| ||||| |||||||||||||||||||||||| |||||| ||| ||||||||||||| |
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| T |
50817451 |
gtatcagcctcgtgaaattgttgactagcatccgtaaactgtttgtatagggttgcattttccagtttcagttttccaacctaagaaatcaaaattcaaa |
50817352 |
T |
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| Q |
119 |
tgtgaagaaagtgatgactacttatg |
144 |
Q |
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| T |
50817351 |
tgggaagaaaatgatcactacttatg |
50817326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 50858413 - 50858538
Alignment:
| Q |
19 |
gtatcagcctcatgaaattgttgactggtatccgtaaactgtttatatagtgttgcattttccagtttcagtttttcaacctgagatatcaaaattcaaa |
118 |
Q |
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||||||||||| |||||||||||||| | ||||||||||||||| ||||| |||||||||||||||||||||||| |||||| ||| ||||||||||||| |
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| T |
50858413 |
gtatcagcctcgtgaaattgttgactagcatccgtaaactgtttgtatagggttgcattttccagtttcagttttccaacctaagaaatcaaaattcaaa |
50858512 |
T |
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| Q |
119 |
tgtgaagaaagtgatgactacttatg |
144 |
Q |
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| T |
50858513 |
tgggaagaaaatgatcactacttatg |
50858538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 50817093 - 50817018
Alignment:
| Q |
162 |
tccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggct |
237 |
Q |
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| T |
50817093 |
tccaaaacattgattagttacctgagactcaagttcaaacaaatgcgcttgttttctccgccttgatctcctggct |
50817018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 50858771 - 50858846
Alignment:
| Q |
162 |
tccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggct |
237 |
Q |
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||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||| |
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| T |
50858771 |
tccaaaacattgattagttacctgagactcaagttcaaacaaatgcgcttgttttctccgccttgatctcctggct |
50858846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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