View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8834_high_3 (Length: 250)
Name: NF8834_high_3
Description: NF8834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8834_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 50485014 - 50484772
Alignment:
| Q |
1 |
tggcaagacaaattcacaagnnnnnnnnnttatgattgaggattgagtttttagtgttgagagttgatggtagagttgtttgtgtgaaaaagaagcgttg |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50485014 |
tggcaagacaaattcacaagaaaaaaaaattatgattgaggattgagtttttagtgttgagagttgatggtagagttgtttgtgtgaaaaagaagcgttg |
50484915 |
T |
|
| Q |
101 |
gtatatagcattattataaggggaaccggtgacagattacttggcaagaggtgaagaagcattgcatgtcgtggctgcattgcatgaaactatgtagtac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50484914 |
gtatatagcattattataaggggaaccggtgacagattacttggcaagaggtgaagaagcattgcatgtcgtggctgcattgcatgaaactatgtagtac |
50484815 |
T |
|
| Q |
201 |
aagaagcaacacctgtcctcttaaatgactagtgtctctgcta |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50484814 |
aagaagcaacacctgtcctcttaaatgactagtgtctctgcta |
50484772 |
T |
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