View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8834_low_1 (Length: 480)
Name: NF8834_low_1
Description: NF8834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8834_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 21597795 - 21598197
Alignment:
| Q |
1 |
tcaattcttaggaatgaaaatgtgccaccagcaacaggaacttcaacggcgaattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcgg |
100 |
Q |
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| T |
21597795 |
tcaattctaaggaatgaaaacgagccaccagcaacaggaacttcaacggcgaattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcgg |
21597894 |
T |
|
| Q |
101 |
cgtaagagaggataatggaaggaccagcatcgagacgagcttcttgacctgtaacgacgaagataccagagccaacaacagcgccgaaagcgagccatgt |
200 |
Q |
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| T |
21597895 |
cgtaagagaggataatggaaggaccagcatcgaaacgagcttcttgaccggtaacgacgaagataccagagccaacgacagcgccgaaagcgagccatgt |
21597994 |
T |
|
| Q |
201 |
taagtcccaccaagtgagacaacgagtcattgtattttcactagctttgggaaggacgagaagttcatgagagtctgttgatcggttgaggagacggtct |
300 |
Q |
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| T |
21597995 |
taagtcccaccaagtgagacaacgagtcattgtattttcactggctttgggaaggacgagaagttcatgggagtctgttgatcggtttaggagacggtct |
21598094 |
T |
|
| Q |
301 |
tttagacgtgggcaggtgtttgctaaggcggttcgataggtttctccggtttggaaagatggttctgggaagaaatcttgcttgctccatcgccagtagc |
400 |
Q |
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| T |
21598095 |
tttagacgtgggcaggtgtttgctaaggcggttcgataggtttctccggtttggaaagatggttctgggaagaaatcttgcttgctccatcgccagtagc |
21598194 |
T |
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| Q |
401 |
ttc |
403 |
Q |
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| T |
21598195 |
ttc |
21598197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 11987562 - 11987687
Alignment:
| Q |
4 |
attcttaggaatgaaaatgtgccaccagcaacaggaacttcaacggcgaattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcggcgt |
103 |
Q |
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|||||||||||| |||| | ||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||||| |
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| T |
11987562 |
attcttaggaatcaaaacgaaccaccggcaacgggaacttcaactgcgaattcagcatagatgaaagctgaaagaagagctgagaatcctgaagcggcgt |
11987661 |
T |
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| Q |
104 |
aagagaggataatggaaggaccagca |
129 |
Q |
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| T |
11987662 |
aggagaggataatggaaggaccagca |
11987687 |
T |
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