View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8834_low_3 (Length: 378)

Name: NF8834_low_3
Description: NF8834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8834_low_3
NF8834_low_3
[»] chr4 (3 HSPs)
chr4 (12-271)||(5689547-5689806)
chr4 (219-271)||(25154484-25154536)
chr4 (67-162)||(25154937-25155032)
[»] chr2 (3 HSPs)
chr2 (12-271)||(29759400-29759657)
chr2 (129-200)||(9751582-9751653)
chr2 (22-66)||(9751692-9751736)
[»] chr5 (6 HSPs)
chr5 (12-180)||(15425896-15426062)
chr5 (127-200)||(12317636-12317709)
chr5 (219-271)||(15425805-15425857)
chr5 (154-200)||(15425846-15425892)
chr5 (127-180)||(26102235-26102288)
chr5 (127-187)||(28753785-28753845)
[»] chr6 (3 HSPs)
chr6 (22-200)||(31866474-31866651)
chr6 (221-271)||(31866642-31866692)
chr6 (125-200)||(10263926-10264000)
[»] chr7 (2 HSPs)
chr7 (126-200)||(2931928-2932002)
chr7 (127-200)||(26640799-26640872)
[»] chr1 (3 HSPs)
chr1 (125-194)||(126909-126978)
chr1 (22-94)||(126826-126898)
chr1 (230-271)||(126984-127025)
[»] scaffold0098 (3 HSPs)
scaffold0098 (221-271)||(50021-50071)
scaffold0098 (125-200)||(49955-50030)
scaffold0098 (22-88)||(49871-49937)
[»] chr8 (2 HSPs)
chr8 (20-82)||(6637071-6637133)
chr8 (126-185)||(6637158-6637217)
[»] chr3 (1 HSPs)
chr3 (127-189)||(498153-498215)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 271
Target Start/End: Original strand, 5689547 - 5689806
Alignment:
Q  12 agcagagatatttccgcaggtaattcctcaggaaactgaaccaatccgcagaaaaatccccaggaaatttaatggttcatcagagcagtctgtttcatca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5689547 agcagagatatttccgcaggtaattcctcaggaaactgaaccaatccgcagaaaaatccccaggaaatttaatggttcatcagagcagtctgtttcatca 5689646  T
Q  112 gtacaannnnnnngattattttctattaatgaatgctaacaaccatattaaaagtcatttttaattattagtttgatatagaagtttatannnnnnnnaa 211  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||    
T  5689647 gtacaatttttttgattattttctattaatgaatgctaacaaccatattaaaagtcatttttaattattagtttgatatagaagtttatattttttttaa 5689746  T
Q  212 agatgacatagaagattattagaaactatctcgagtcaaatttggcacatagcatatgcg 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5689747 agatgacatagaagattattagaaactatctcgagtcaaatttggcacatagcatatgcg 5689806  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 25154536 - 25154484
Alignment:
Q  219 atagaagattattagaaactatctcgagtcaaatttggcacatagcatatgcg 271  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25154536 atagaagtttattagaaactatctcgagtcaaatttggcacatagcatatgcg 25154484  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 25155032 - 25154937
Alignment:
Q  67 atccccaggaaatttaatggttcatcagagcagtctgtttcatcagtacaannnnnnngatta-ttttctattaatgaatgctaacaaccatattaa 162  Q
    |||| ||||||||||| |||||||||||| || | ||||||||||||||||       ||||| |||||||||||||||||| |||| |||||||||    
T  25155032 atccgcaggaaatttactggttcatcagaacaatttgtttcatcagtacaa-ttttttgattatttttctattaatgaatgccaacagccatattaa 25154937  T

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Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 12 - 271
Target Start/End: Complemental strand, 29759657 - 29759400
Alignment:
Q  12 agcagagatatttccgcaggtaattcctcaggaaactgaaccaatccgcagaaaaatccccaggaaatttaatggttcatcagagcagtctgtttcatca 111  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   |||||| ||| |  |||||||||||     
T  29759657 agcagagctatttccgcaggtaattcgtcaggaaactgaaccaatccgcagaaaaatccccaggaaatttatctgttcataagaaccatctgtttcatcg 29759558  T
Q  112 gtacaannnnnnngattattttctattaatgaatgctaacaaccatattaaaagtcatttttaattattagtttgat-atagaagtttatannnnnnnna 210  Q
    ||||||       ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||  |||||| ||||||||||||              
T  29759557 gtacaa-ttttttgattattttctattaatgaatgccaacagccatattaaaagtcatttttaattatt-ttttgataatagaagtttat-ttatttttt 29759461  T
Q  211 aagatgacatagaagattattagaaactatctcgagtcaaatttggcacatagcatatgcg 271  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29759460 aagatgatatagaagtttattagaaactatctcgagtcaaatttggcacatagcatatgcg 29759400  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 9751653 - 9751582
Alignment:
Q  129 attttctattaatgaatgctaacaaccatattaaaagtcatttttaattattagtttgatatagaagtttat 200  Q
    |||||||||||||||   | || | ||||| || |||||||||||||||||| |||||||| ||||||||||    
T  9751653 attttctattaatgataaccaaaatccataatagaagtcatttttaattatttgtttgataaagaagtttat 9751582  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 9751736 - 9751692
Alignment:
Q  22 tttccgcaggtaattcctcaggaaactgaaccaatccgcagaaaa 66  Q
    ||||||||||||| ||||||||||||  |||||||||||| ||||    
T  9751736 tttccgcaggtaaatcctcaggaaacgaaaccaatccgcaaaaaa 9751692  T

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Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 15426062 - 15425896
Alignment:
Q  12 agcagagatatttccgcaggtaattcctcaggaaactgaaccaatccgcagaaaaatccccaggaaatttaatggttcatcagagcagtctgtttcatca 111  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15426062 agcagagctatttccgcaggtaattcctcaggaaactgaaccaacccgcagaaaa-tccccaggaaatttaatggttcatcagagcagtctgtttcatca 15425964  T
Q  112 gtacaannnnnnngattattttctattaatgaatgctaacaaccatattaaaagtcatttttaattatt 180  Q
    ||||||       ||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||    
T  15425963 gtacaa-ttatttgattattttctattaataaatgccaacagccatattaaaagtcatttttaattatt 15425896  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 12317709 - 12317636
Alignment:
Q  127 ttattttctattaatgaatgctaacaaccatattaaaagtcatttttaattattagtttgatatagaagtttat 200  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||||||| | |||||||| ||||||||||    
T  12317709 ttattttctattaatgaatgccaaaagccatattaaaagtcatttttaattactggtttgataaagaagtttat 12317636  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 15425857 - 15425805
Alignment:
Q  219 atagaagattattagaaactatctcgagtcaaatttggcacatagcatatgcg 271  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15425857 atagaagtttattagaaactatctcgagtcaaatttggcacatagcatatgcg 15425805  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 15425892 - 15425846
Alignment:
Q  154 ccatattaaaagtcatttttaattattagtttgatatagaagtttat 200  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||    
T  15425892 ccatattaaaagtcatttttaattatttatttgatatagaagtttat 15425846  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 26102288 - 26102235
Alignment:
Q  127 ttattttctattaatgaatgctaacaaccatattaaaagtcatttttaattatt 180  Q
    |||||||||||||||||||||  | |||||||| |||| |||||| ||||||||    
T  26102288 ttattttctattaatgaatgcccaaaaccatatcaaaattcatttctaattatt 26102235  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 28753785 - 28753845
Alignment:
Q  127 ttattttctattaatgaatgctaacaaccatattaaaagtcatttttaattattagtttga 187  Q
    ||||||||| ||||||||||| ||    ||||||||||||| |||||||||||| ||||||    
T  28753785 ttattttcttttaatgaatgccaaatggcatattaaaagtcctttttaattatttgtttga 28753845  T

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Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 31866474 - 31866651
Alignment:
Q  22 tttccgcaggtaattcctcaggaaactgaaccaatccgcagaaaaatccccaggaaatttaatggttcatcagagcagtctgtttcatcagtacaannnn 121  Q
    ||||||||| ||||||||||||||||| || | ||  |||||||||||| ||||| ||||| ||||||||||   || | || |||||||||||||        
T  31866474 tttccgcagataattcctcaggaaacttaatctattagcagaaaaatccacaggatatttactggttcatcaatacaatttggttcatcagtacaatttt 31866573  T
Q  122 nnngattattttctattaatgaatgctaacaaccatattaaaagtcatttttaattattagtttgatatagaagtttat 200  Q
        |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||||    
T  31866574 tta-attattttctattaatgaatgccaacagccatattaaaagtcatttttaattatttgtttgataaagaagtttat 31866651  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 31866642 - 31866692
Alignment:
Q  221 agaagattattagaaactatctcgagtcaaatttggcacatagcatatgcg 271  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  31866642 agaagtttattagaaactatctcgagtcaaatttgggacatagcatatgcg 31866692  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 10263926 - 10264000
Alignment:
Q  125 gattattttctattaatgaatgctaacaaccatattaaaagtcatttttaattattagtttgatatagaagtttat 200  Q
    ||||| ||||||||||||||||| |||||||||||||||| | |||||||||||||  |||| || ||||||||||    
T  10263926 gattaatttctattaatgaatgccaacaaccatattaaaa-tgatttttaattatttatttggtaaagaagtttat 10264000  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 2932002 - 2931928
Alignment:
Q  126 attattttctattaatgaatgctaacaaccatattaaaagtcatttttaattattagtttgatatagaagtttat 200  Q
    |||||||||||| ||||||||| |||| ||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  2932002 attattttctatcaatgaatgccaacagccatattaaaagtgatttttaattatttgtttgataaagaagtttat 2931928  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 26640872 - 26640799
Alignment:
Q  127 ttattttctattaatgaatgctaacaaccatattaaaagtcatttttaattattagtttgatatagaagtttat 200  Q
    ||||||||||||||||||||| || | |  || ||||||| ||||||||||||| || ||||| ||||||||||    
T  26640872 ttattttctattaatgaatgccaaaagctgtaataaaagtaatttttaattatttgtgtgataaagaagtttat 26640799  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 126909 - 126978
Alignment:
Q  125 gattattttctattaatgaatgctaacaaccatattaaaagtcatttttaattattagtttgatatagaa 194  Q
    |||||||||||| |||||||||  ||||||||||||||||||| |||||||||||| |||||||| ||||    
T  126909 gattattttctagtaatgaatgtcaacaaccatattaaaagtcttttttaattatttgtttgataaagaa 126978  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 126826 - 126898
Alignment:
Q  22 tttccgcaggtaattcctcaggaaactgaaccaatccgcagaaaaatccccaggaaatttaatggttcatcag 94  Q
    |||||||||||| |||||||||||||| |||||| |||||||||||| |  |||||||| | |||||||||||    
T  126826 tttccgcaggtagttcctcaggaaacttaaccaaaccgcagaaaaattcagaggaaattaagtggttcatcag 126898  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 126984 - 127025
Alignment:
Q  230 ttagaaactatctcgagtcaaatttggcacatagcatatgcg 271  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  126984 ttagaaactatctcgagtcaaatttgggatatagcatatgcg 127025  T

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Target: scaffold0098 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 50021 - 50071
Alignment:
Q  221 agaagattattagaaactatctcgagtcaaatttggcacatagcatatgcg 271  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  50021 agaagtttattagaaactatctcgagtcaaatttgggacatagcatatgcg 50071  T

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Target: scaffold0098; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 49955 - 50030
Alignment:
Q  125 gattattttctattaatgaatgctaacaaccatattaaaagtcatttttaattattagtttgatatagaagtttat 200  Q
    |||||||||| |||||| ||||  |||||||||||||| |||  |||||||||||| ||||| || ||||||||||    
T  49955 gattattttcaattaatcaatgtcaacaaccatattaacagttttttttaattatttgtttgttaaagaagtttat 50030  T

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Target: scaffold0098; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 49871 - 49937
Alignment:
Q  22 tttccgcaggtaattcctcaggaaactgaaccaatccgcagaaaaatccccaggaaatttaatggtt 88  Q
    ||||||| |||||||| ||| |||||||||| ||  | ||||||||||| ||||||||||| |||||    
T  49871 tttccgctggtaattcttcaagaaactgaacgaaatcacagaaaaatccgcaggaaatttagtggtt 49937  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 6637071 - 6637133
Alignment:
Q  20 tatttccgcaggtaattcctcaggaaactgaaccaatccgcagaaaaatccccaggaaattta 82  Q
    |||||||||| |||||||||||| |||||||||||||||||||||| |||  |||||||||||    
T  6637071 tatttccgcaagtaattcctcagcaaactgaaccaatccgcagaaacatcggcaggaaattta 6637133  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 6637158 - 6637217
Alignment:
Q  126 attattttctattaatgaatgctaacaaccatattaaaagtcatttttaattattagttt 185  Q
    |||||||||||||||||||||| || | ||  |||||||||||||||| |||||| ||||    
T  6637158 attattttctattaatgaatgccaatagccggattaaaagtcattttttattatttgttt 6637217  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 498153 - 498215
Alignment:
Q  127 ttattttctattaatgaatgctaacaaccatattaaaagtcatttttaattattagtttgata 189  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||||||| | ||||||||    
T  498153 ttattttctattaatgaatgcgaaaagccatattaaaagtcatttttaattactggtttgata 498215  T

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