View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8835_high_1 (Length: 405)
Name: NF8835_high_1
Description: NF8835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8835_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 25432000 - 25431626
Alignment:
| Q |
19 |
acgcatatgatcagtaaacatgtttcgtctcttccttttcacataaacaccacgcctattaagatatttgattgaattctcattccataaatactctttc |
118 |
Q |
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| T |
25432000 |
acgcatatgatcagtaaacatgtttcgtctcctccttttcacataaacaccacgcccatcaagatatttgattgaattcttattccataaatactctttc |
25431901 |
T |
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| Q |
119 |
cattcnnnnnnncatgccctaggtgcttgctttaagtcatataaagcatttgtttagcttgtagactttatcctttttacatctgatactaaatccaagc |
218 |
Q |
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| ||| |||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25431900 |
ctttctttttttcatgccctaggtgcttgcttcaagccatataaagcctttgtttagcttgtagactttatcctttttacatctgatactaaatacaagc |
25431801 |
T |
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| Q |
219 |
ggttgtttgataaacacaatttcttcaagaaaaccgttcagaaaagttgatttcacatctaaatgatacaaaggctaggctttgctagtcgctactacaa |
318 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
25431800 |
ggttgtttgataaacacaatttcttcaagaagaccgtttagaaaagttgatttcacatctaaatgatacaaaggctaggatttgctagttgctactacaa |
25431701 |
T |
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| Q |
319 |
tgactagcctgatagtttcatgacttgcaactaccgataatacttgattattcatagccttcactttgtaagaat |
393 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
25431700 |
tgactagcctgatagtttcatgacttgcaactacccataatacttcattattcatagccttcactttgtaagaat |
25431626 |
T |
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