View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8835_high_3 (Length: 356)
Name: NF8835_high_3
Description: NF8835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8835_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 50314020 - 50313812
Alignment:
| Q |
19 |
tccttaacataaaaacctaactcatcccaatactcacattcatccacatccac------tcattccactttgttcctcacttcagttcaatggctcgtaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50314020 |
tccttaacataaaaacctaactcatcccaatactcacattcatccacatccacatccactcattccactttgttcctcacttgagttcaatggctcgtat |
50313921 |
T |
|
| Q |
113 |
atttttcaacttcatcctcttcattttcttctgggtttccccattagcacattctcgaaacataccccacaatgccaaaaccacaatactcgatgttgtt |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50313920 |
atttttcaactttatcctcttcattttcttctgggtttccccattagcacattctcgaaacataccccacaatgccaaaaccacaatactcgatgttgtt |
50313821 |
T |
|
| Q |
213 |
tcttccatt |
221 |
Q |
| |
|
||||||||| |
|
|
| T |
50313820 |
tcttccatt |
50313812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 281 - 346
Target Start/End: Complemental strand, 50313752 - 50313687
Alignment:
| Q |
281 |
gagtccattcacttcttcaacatcaacactgtctttgcaactgcattcacgtgcatccctttcttc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50313752 |
gagtccattcacttcttcaacatcaacactgtctttgcaactgcattcacgtgcatccctttcttc |
50313687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University