View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8835_low_1 (Length: 519)
Name: NF8835_low_1
Description: NF8835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8835_low_1 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 519
Target Start/End: Original strand, 43255146 - 43255627
Alignment:
| Q |
18 |
atgccgagacaagtttcaaaatagacggcgatggcagatccggtagaccaaagtggaggatctgtttcacatgaggtggtggtttcggtgggggacgctc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || || | || || |
|
|
| T |
43255146 |
atgccgagacaagtttcaaaatagacggcgatggcagatccggtagaccaaagtggaggatctgtttcacataaggtggggga--cgctcgg------tc |
43255237 |
T |
|
| Q |
118 |
agtcgagacagagattgtgtttcgagcaaaagagaaagatcatgtaaatgaagaggttttgtggatctggatcggtggcagcaaaagatgtgatggtggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| |
|
|
| T |
43255238 |
ggtcgagacagagattgtgtttcgagcaaaagagaaagatcatgtaaatgaagaggt----------------ggggcaagcaaaagatgtgatggtggt |
43255321 |
T |
|
| Q |
218 |
gacat----ggtaaggaggatggaatttggattgggatgggcaagcaagtaacaaaaggaacctttcatgagaaagggaaaacttccattaaggaagggg |
313 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255322 |
gacatatatggtaaggaggatggaatttggattgggaggggcaagcaagtaacaaaaggaacctttcatgagaaagggaaaacttccattaaggaagggg |
43255421 |
T |
|
| Q |
314 |
tgcaacaaagaagttaacacacaaagatgctgaattattctagttcttgtaaatgtcatttcttacaaggccatatcatgaaacatgctcacaggatgcc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43255422 |
tgcaacaaagaagttaacacacaaagatgctgaattattctagttcttgtaaatgtcatttcttacaaggccacatcatgaaacatgctcacaggatgct |
43255521 |
T |
|
| Q |
414 |
aagacaagaaagtgaagaaaaggtggttgagnnnnnnnggtaataattataacttacagcaaccaacaagagcaaagaaaagaaaagagcatatatataa |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
43255522 |
aagacaagaaagtgaagaaaaggtggttgagtttttttggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataa |
43255621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 314 - 519
Target Start/End: Original strand, 43258688 - 43258893
Alignment:
| Q |
314 |
tgcaacaaagaagttaacacacaaagatgctgaattattctagttcttgtaaatgtcatttcttacaaggccatatcatgaaacatgctcacaggatgcc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
43258688 |
tgcaacaaagaagttaacacacaaagatgctgaatatttctagttcttgtaaatgtcatttcttacaaggccacatcatgaaacatgctcacaagatgct |
43258787 |
T |
|
| Q |
414 |
aagacaagaaagtgaagaaaaggtggttgagnnnnnnnggtaataattataacttacagcaaccaacaagagcaaagaaaagaaaagagcatatatataa |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
43258788 |
aagacaagaaagtgaagaaaaggtggttgagtttttttggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataa |
43258887 |
T |
|
| Q |
514 |
tacatt |
519 |
Q |
| |
|
|||||| |
|
|
| T |
43258888 |
tacatt |
43258893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 376
Target Start/End: Original strand, 43226006 - 43226066
Alignment:
| Q |
314 |
tgcaacaaagaagttaacacacaaagatgctgaattattctagttcttgtaaatgtcatttct |
376 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||| |||||||||||||| ||||||||||| |
|
|
| T |
43226006 |
tgcaacaaagaagttaacacac--agataccgaatatttctagttcttgtacatgtcatttct |
43226066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University