View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8835_low_3 (Length: 398)
Name: NF8835_low_3
Description: NF8835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8835_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 29930717 - 29930320
Alignment:
| Q |
1 |
attatatccaagtacacttacttttgttcaaatagtgaaaaggtgcatgtgttatatttttgaaagagattttttatgttcaaagtattggtaatttatg |
100 |
Q |
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| T |
29930717 |
attatatccaagtacacttacttttgttcaaatagtgaaaaggtgcatgtgttatatttttgaaagagattttttatgttcaaagtattggtaatttatg |
29930618 |
T |
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| Q |
101 |
aaatcttgagaggagcatataaattgtgggcgactgcaaaggagaccctatcatacagaagagatgtgtttcaccaaaagatcaaggaaatacttgttgg |
200 |
Q |
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| T |
29930617 |
aaatcttgggaggagcttataaattgtgggcgactgcaaaggagaccctatcatacagaagagatgtgtttcaccaaaagatcaaggaaatacttgttgg |
29930518 |
T |
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| Q |
201 |
atttgtggttggatctaattatgcaactttaccgaaggtttcgagcttgacacttcagattaggctcttagagtaatttttattctgcagtggttgattc |
300 |
Q |
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| T |
29930517 |
atttgtggttggatctatttatgcaactttacggaaggtttcgagcttgacacttcagattaggctcttagagtaatttttagtctgcagtggttgattc |
29930418 |
T |
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| Q |
301 |
gactctggaattatttcttttcaaagtaaagtatgctttcaatgtggtcaagtatgtcatatcaggagagatcgtcattggcaactgcaacataatca |
398 |
Q |
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| T |
29930417 |
gactctggaaatatttcttttcaaagtaaagtatgctttcaatgtggtcaagtatgtcatatcaggagagatcgtccttggcaactacaacataatca |
29930320 |
T |
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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 353
Target Start/End: Original strand, 30608074 - 30608164
Alignment:
| Q |
267 |
cttagagtaatttttattctgcagtggttgattcgactctggaattatttcttttcaaa----gtaaagtatgctttcaatgtggtcaagt |
353 |
Q |
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| T |
30608074 |
cttagagtaattttgattctaaagtggttgattagactctggaaatattttgtttcatagatggtaaagtatgctttcaatgtggtcaagt |
30608164 |
T |
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