View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8835_low_4 (Length: 398)
Name: NF8835_low_4
Description: NF8835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8835_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 29311606 - 29311798
Alignment:
| Q |
11 |
ttatactcttatatgttgttctagggttatgggatttcccttttcnnnnnnnatttataaaagttaagtttaagtgatattaatttttatgtaggtattc |
110 |
Q |
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| T |
29311606 |
ttatactcttatatgttgttctagggttatgggatttcccttttctttttttatttataaaagttaagtttaagtgatattaatttttatgtaggtattc |
29311705 |
T |
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| Q |
111 |
ccgaatctctatggagataacttcccaagactatttacctattggacggtacgtaaatttattgaattaaagaagattgagaaataatacaag |
203 |
Q |
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| T |
29311706 |
ccgaatctctatggagatgacttcccaagactatttacctattggacggtacgtaaatttattgaattaaagaaggttgaaaaataatacaag |
29311798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 273 - 380
Target Start/End: Original strand, 29311866 - 29311973
Alignment:
| Q |
273 |
ttaataattgcagtctgatttagaaagacaaagtggctgcttcaatttaaaatgcgttggctttgttcaaacaagcaagaaaactttattgggagggaga |
372 |
Q |
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| T |
29311866 |
ttaataattgcagtctgatttagaaagacaaagtggatgcttcaatttaaaatgcgttggctttgttcaaacaagcaagaaaaatttattgggagggaga |
29311965 |
T |
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| Q |
373 |
cttggtcc |
380 |
Q |
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| T |
29311966 |
cttggtcc |
29311973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 344
Target Start/End: Original strand, 29343164 - 29343247
Alignment:
| Q |
261 |
gtaacatacacgttaataattgcagtctgatttagaaagacaaagtggctgcttcaatttaaaatgcgttggctttgttcaaac |
344 |
Q |
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| T |
29343164 |
gtaacatacacattattaattgcaggctgatccagaaagacaaaatgggtgctacgatttaaaatgttcaggctttgttcaaac |
29343247 |
T |
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