View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8835_low_6 (Length: 326)
Name: NF8835_low_6
Description: NF8835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8835_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 24562101 - 24561960
Alignment:
| Q |
11 |
attattctaaacaaaaatttaatttgtatgcgccaacgatgtgaaacacttttatagtacatatactttctatgttctaaattataagcaaaagtaattc |
110 |
Q |
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| T |
24562101 |
attattctaaacaaaaatttaatttgtatgcaccaacaatatgaaacatttttatagtacatatactttctatgttttaaattataagcaaaagtaattc |
24562002 |
T |
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| Q |
111 |
aacaaaaaatggtgtatttggtccaaaattttaaccaaatat |
152 |
Q |
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| T |
24562001 |
aacaaaaaatgatgcatttggtccaaaattttaaccaaatat |
24561960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 167 - 326
Target Start/End: Complemental strand, 24561877 - 24561736
Alignment:
| Q |
167 |
caaatgtctaaatcataagatataattagatgcacgtgtaaaatagttatgcgctctaagtacatacaaattaaatcattaactcaacctcacactatat |
266 |
Q |
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| T |
24561877 |
caaatgtataaatcataagatataattagatgcacgtgtaaaata----------------acatacaaattaaatcattaactcaacctcacactat-- |
24561796 |
T |
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| Q |
267 |
tgtaattcaacttactttttaattttatttatggtcactaaattaccgcaggcactgaag |
326 |
Q |
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| T |
24561795 |
tgtaattcaacttactttttaattttatttatggtcactaaattaccacaggcactgaag |
24561736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 22547534 - 22547574
Alignment:
| Q |
114 |
aaaaaatggtgtatttggtccaaaattttaaccaaatatat |
154 |
Q |
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| T |
22547534 |
aaaaaatgatgtatttggtctaaaatttgaaccaaatatat |
22547574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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