View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8835_low_8 (Length: 271)
Name: NF8835_low_8
Description: NF8835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8835_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 44551006 - 44551264
Alignment:
| Q |
1 |
caccaatcatttcttgagattaattaattaagccatatagaggtatatggggagaattggaggcaacaagcattatgcttatataccagtataagaaaac |
100 |
Q |
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| T |
44551006 |
caccaatcatttcttgagattaattaattaagccatatagaggtatatggggagaattggaggcaacaagcattatgcttatataccagtataagaaaac |
44551105 |
T |
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| Q |
101 |
ttatagtgctattctatattgtcgtaaataatttacagttaggaagtgaaatgattttgtgctaaatatacattcttttagcacaaatccaacatacaag |
200 |
Q |
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| T |
44551106 |
ttataatgctattctatatagtcgtaaataatttacagttaagaagtgaaatgattttgtgctaaatatacattcttttagcacaaatccaacatacaag |
44551205 |
T |
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| Q |
201 |
tcaagaaatttcaacatnnnnnnnncaaatagaactaaagaatatatgagaggagaatt |
259 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44551206 |
tcaagaaatttcaacataaaaaaaacaaatagaactaaagaatatatgagaggagaatt |
44551264 |
T |
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