View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8835_low_9 (Length: 217)
Name: NF8835_low_9
Description: NF8835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8835_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 29930206 - 29929999
Alignment:
| Q |
1 |
aaagcaatacattgagagttaagatcatctt-----gcttaaaataaatggagatttgcaatttgattgccgctaagaattatcgaaaattgttgtcaaa |
95 |
Q |
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| T |
29930206 |
aaagcaatgcattgagagttaagatcatcttcatttgcttaaaataaatggagatttgcaattggattgccgctaggaattatcgaaaattgttgtcaaa |
29930107 |
T |
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| Q |
96 |
tgtcttaattcagagcataatttgatgcaatgaaaatagcagctccaatactaagaaggaatatacatcttgtagaatgaataactcgtttatttattga |
195 |
Q |
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| T |
29930106 |
tgtcttaattcagagcataatttgatgcaatgaaaatagcagctccaatactaagaaggaatatacatcttgtagaatgagtaactcgtttatttattga |
29930007 |
T |
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| Q |
196 |
tatatttg |
203 |
Q |
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|||||||| |
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| T |
29930006 |
tatatttg |
29929999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 203
Target Start/End: Complemental strand, 28261065 - 28260971
Alignment:
| Q |
108 |
gagcataatttgatgcaatgaaaatagcagctccaatactaagaaggaatatacatcttgtagaatgaataactcgtttatttattgatatatttg |
203 |
Q |
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||||||||||||| | |||||||| |||| ||||||||| |||||||| |||||| |||||||||||| | | | | ||||||||||||||||| |
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| T |
28261065 |
gagcataatttgaagtaatgaaaagagcaactccaatac-aagaaggacaatacatattgtagaatgaagcaatagctgatttattgatatatttg |
28260971 |
T |
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