View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8836_high_5 (Length: 250)
Name: NF8836_high_5
Description: NF8836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8836_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 42033083 - 42033321
Alignment:
| Q |
1 |
ccaacaaacgcacaaagcaattatcgcagacaaacatatgaaattaaaatatcactcacttaattaataagctttagtaatgctagtaaaatacctacac |
100 |
Q |
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| T |
42033083 |
ccaacaaacgcacaaagcaattatcgcagacaaacatatgaaattaaaatatcactcacttaattaataagctttagtaatgctagtaaaatacttacac |
42033182 |
T |
|
| Q |
101 |
agatatctaattcatactacaaactctttcgaagtcacagaagcacacaactctttcaaagtacaaactatcatttacaattccaaataaacttgcatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42033183 |
agatatctaattcatactacaaactctttcgaagtcgcagaagcacacaactctttcaaagtacaaactatcatttacaattccaaataaacttgcatct |
42033282 |
T |
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| Q |
201 |
caaacagtaaaatactccttgatagcttccagtatctgt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
42033283 |
caaacagtaaaatactccttgatagcttccagtatctgt |
42033321 |
T |
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