View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8836_low_3 (Length: 295)
Name: NF8836_low_3
Description: NF8836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8836_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 35843647 - 35843913
Alignment:
| Q |
19 |
acaagtactaatatttacaccaaagtgcattaactcccggagattgaagtaggtacagaaataaataaatcagaatcagttactttcactatgacttgta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35843647 |
acaagtactaatatttacaccaaagtgcattaactcccggagattgaagtaggtacagaaataaataaatcagaatcagttactttcactatgacttgta |
35843746 |
T |
|
| Q |
119 |
gttagctcacccggtcaacggtggctcattgttggcgccaccacacaaccaccattgccggacaatttcagagacctatagaaaaatgaaacattccaat |
218 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35843747 |
gttagctcacccggtcaacggtggttcattgttggcgccaccccacaaccaccattgccggacaatttcagagacctatagaaaaatgaaacattccaat |
35843846 |
T |
|
| Q |
219 |
gacaccagtggattttccagcgactcattagcacgagaccttttactgtccatggccggcatctctg |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35843847 |
gacaccagtggattttccagcgactcattagcacgagaccttttaccgtccatggccggcatctctg |
35843913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 3274772 - 3274732
Alignment:
| Q |
198 |
agaaaaatgaaacattccaatgacaccagtggattttccag |
238 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
3274772 |
agaaagatgaagcattccaatgacacaagtggattttccag |
3274732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University