View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8836_low_4 (Length: 281)

Name: NF8836_low_4
Description: NF8836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8836_low_4
NF8836_low_4
[»] chr4 (2 HSPs)
chr4 (22-271)||(51700138-51700387)
chr4 (113-214)||(56341708-56341809)
[»] chr5 (5 HSPs)
chr5 (113-207)||(7823020-7823114)
chr5 (133-216)||(35074041-35074124)
chr5 (114-195)||(29681584-29681665)
chr5 (177-215)||(25214334-25214372)
chr5 (177-215)||(25278484-25278522)
[»] chr2 (7 HSPs)
chr2 (136-240)||(21294804-21294907)
chr2 (113-195)||(19912431-19912513)
chr2 (118-194)||(21289551-21289627)
chr2 (131-195)||(45276510-45276574)
chr2 (26-80)||(21294956-21295010)
chr2 (186-216)||(22425206-22425236)
chr2 (28-93)||(21289645-21289710)
[»] chr1 (3 HSPs)
chr1 (131-209)||(28201570-28201648)
chr1 (164-209)||(29530294-29530340)
chr1 (26-79)||(29530164-29530217)
[»] chr6 (1 HSPs)
chr6 (186-244)||(17190908-17190966)
[»] chr7 (5 HSPs)
chr7 (164-208)||(7280262-7280307)
chr7 (152-216)||(17188549-17188613)
chr7 (152-209)||(34225969-34226027)
chr7 (152-209)||(34230097-34230155)
chr7 (26-85)||(7578601-7578661)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 51700387 - 51700138
Alignment:
Q  22 tatcggtccttaattattgtgatcattcacatgctcatttgtatcatataaagaggactcatatcttaatgtaatacactagcttgtttctagaataata 121  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||    
T  51700387 tatcggttcttaattattttgatcattcacatgctcatttgtatcatataaagaggactcatatcttaatgtaatacact----tgtttctagaataata 51700292  T
Q  122 caaaagtcatcatcttctctatctttgattatcttctctacatttgatcttgtcattta----gtttatttcataacatgttatcagcacgagactctac 217  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||| |||||||||||||||||||||||    
T  51700291 caaaagccatcatcttctctatctttgattatcttctctacatttgatcttgtcatttaattagtttatttcataatatgttatcagcacgagactctac 51700192  T
Q  218 cagagcaatgacttaattatcttagagattcactatgataatgagtataatcta 271  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  51700191 cagagcaatgacttaattatcttagagattcagtatgataatgagtatgatcta 51700138  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 214
Target Start/End: Complemental strand, 56341809 - 56341708
Alignment:
Q  113 agaataatacaaaagtcatcatcttctctatctttgattatcttctctacatttgatcttgtcatttagtttatttcataacatgttatcagcacgagac 212  Q
    ||||||||||||||    |||||||||   |||||||| ||||||||||  ||| ||||||||||||| ||||||| |||||||||||||||| ||| ||    
T  56341809 agaataatacaaaaactctcatcttcttggtctttgatcatcttctctattttttatcttgtcatttaatttattttataacatgttatcagcccgaaac 56341710  T
Q  213 tc 214  Q
    ||    
T  56341709 tc 56341708  T

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Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 7823114 - 7823020
Alignment:
Q  113 agaataatacaaaagtcatcatcttctctatctttgattatcttctctacatttgatcttgtcatttagtttatttcataacatgttatcagcac 207  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  7823114 agaataatacaaaagttctcatcttctctatctttgattatcttctctacatttgattttgtcatttagtttatttcataacacgttatcagcac 7823020  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 35074124 - 35074041
Alignment:
Q  133 atcttctctatctttgattatcttctctacatttgatcttgtcatttagtttatttcataacatgttatcagcacgagactcta 216  Q
    |||||||||||||||||| ||||||| ||  |||| |||||||||||| ||||||||||||||  |||||  ||||| ||||||    
T  35074124 atcttctctatctttgatcatcttctttatttttgctcttgtcatttattttatttcataacacattatcgacacgaaactcta 35074041  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 29681665 - 29681584
Alignment:
Q  114 gaataatacaaaagtcatcatcttctctatctttgattatcttctctacatttgatcttgtcatttagtttatttcataaca 195  Q
    |||||||||||||    |||| ||||||||||||| |  |||||||||  ||| ||||||||||||||||||||||||||||    
T  29681665 gaataatacaaaaactttcattttctctatctttggtcttcttctctatttttcatcttgtcatttagtttatttcataaca 29681584  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 25214372 - 25214334
Alignment:
Q  177 tttagtttatttcataacatgttatcagcacgagactct 215  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  25214372 tttagtttatttcataacacgttatcagcacgaaactct 25214334  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 25278522 - 25278484
Alignment:
Q  177 tttagtttatttcataacatgttatcagcacgagactct 215  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  25278522 tttagtttatttcataacacgttatcagcacgaaactct 25278484  T

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Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 21294907 - 21294804
Alignment:
Q  136 ttctctatctttgattatcttctctacatttgatcttgtcatttagtttatttcataacatgttatcagcacgagactctaccagagcaatgacttaatt 235  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||| ||||||||||||| ||||||||| || |||| |||||||    
T  21294907 ttctctatctttgattatcttctctacatttgattttgtaatttagtttattttataacacgttatcagcacgaaactctacca-agaaatgtcttaatt 21294809  T
Q  236 atctt 240  Q
    |||||    
T  21294808 atctt 21294804  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 19912431 - 19912513
Alignment:
Q  113 agaataatacaaaagtcatcatcttctctatctttgattatcttctctacatttgatcttgtcatttagtttatttcataaca 195  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19912431 agaataatacaaaagctctcatcttctctatctttgattatcttctctacatttgattttgtcatttagtttatttcataaca 19912513  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 21289627 - 21289551
Alignment:
Q  118 aatacaaaagtcatcatcttctctatctttgattatcttctctacatttgatcttgtcatttagtttatttcataac 194  Q
    ||||||||||   |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  21289627 aatacaaaagctctcatgttctctatctttgattatcttctctacatttgattttgtcatttagtttattttataac 21289551  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 45276510 - 45276574
Alignment:
Q  131 tcatcttctctatctttgattatcttctctacatttgatcttgtcatttagtttatttcataaca 195  Q
    ||||||||||||||||| || |||||| |||  ||| ||||||||||||||||||||||||||||    
T  45276510 tcatcttctctatcttttatcatcttcactattttttatcttgtcatttagtttatttcataaca 45276574  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 21295010 - 21294956
Alignment:
Q  26 ggtccttaattattgtgatcattcacatgctcatttgtatcatataaagaggact 80  Q
    |||||||||| | | ||||||||||| |||||||||||||| |||||| ||||||    
T  21295010 ggtccttaatgactttgatcattcacttgctcatttgtatcctataaataggact 21294956  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 216
Target Start/End: Original strand, 22425206 - 22425236
Alignment:
Q  186 tttcataacatgttatcagcacgagactcta 216  Q
    |||||||||||||||||||||||||||||||    
T  22425206 tttcataacatgttatcagcacgagactcta 22425236  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 21289710 - 21289645
Alignment:
Q  28 tccttaattattgtgatcattcacatgctcatttgtatcatataaagaggactcatatcttaatgt 93  Q
    |||||||||| | ||||||||||| ||||||||||| || |||||| |||||| ||||  ||||||    
T  21289710 tccttaattactttgatcattcacttgctcatttgtgtcctataaataggacttatattgtaatgt 21289645  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 28201648 - 28201570
Alignment:
Q  131 tcatcttctctatctttgattatcttctctacatttgatcttgtcatttagtttatttcataacatgttatcagcacga 209  Q
    |||| ||||||||||||||| ||||||||||  ||| ||||||||||||||||||||||||| ||||||||||||||||    
T  28201648 tcatattctctatctttgatcatcttctctattttttatcttgtcatttagtttatttcatatcatgttatcagcacga 28201570  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 29530294 - 29530340
Alignment:
Q  164 tttgatcttgt-catttagtttatttcataacatgttatcagcacga 209  Q
    ||||||||||| | ||||||||||||||| |||||||||||||||||    
T  29530294 tttgatcttgtgcttttagtttatttcattacatgttatcagcacga 29530340  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 29530164 - 29530217
Alignment:
Q  26 ggtccttaattattgtgatcattcacatgctcatttgtatcatataaagaggac 79  Q
    |||||||||||  | ||||||||||| ||||||||||| ||||||||| |||||    
T  29530164 ggtccttaattggtttgatcattcacttgctcatttgtgtcatataaataggac 29530217  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 17190908 - 17190966
Alignment:
Q  186 tttcataacatgttatcagcacgagactctaccagagcaatgacttaattatcttagag 244  Q
    ||||||||||  |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  17190908 tttcataacaaattattagcacgagactctactagagcaatgacttaattatcttagag 17190966  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 7280262 - 7280307
Alignment:
Q  164 tttgatcttgt-catttagtttatttcataacatgttatcagcacg 208  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||    
T  7280262 tttgatcttgtacttttagtttatttcataacatgttatcagcacg 7280307  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 17188549 - 17188613
Alignment:
Q  152 atcttctctacatttgatcttgtcatttagtttatttcataacatgttatcagcacgagactcta 216  Q
    ||||||||||  |||||| ||||||||||||||| || |||||| |||||||| ||||| |||||    
T  17188549 atcttctctatttttgatattgtcatttagtttagtttataacacgttatcagtacgaggctcta 17188613  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 34226027 - 34225969
Alignment:
Q  152 atcttctctacatttgatcttgtcattt-agtttatttcataacatgttatcagcacga 209  Q
    |||||||| | ||||||||||||| ||| |||||||||||||||| ||||||| |||||    
T  34226027 atcttctccatatttgatcttgtctttttagtttatttcataacacgttatcaacacga 34225969  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 34230155 - 34230097
Alignment:
Q  152 atcttctctacatttgatcttgtcattt-agtttatttcataacatgttatcagcacga 209  Q
    |||||||| | ||||||||||||| ||| |||||||||||||||| ||||||| |||||    
T  34230155 atcttctccatatttgatcttgtctttttagtttatttcataacacgttatcaacacga 34230097  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 7578601 - 7578661
Alignment:
Q  26 ggtccttaattattgtgatcattcacatgctcat-ttgtatcatataaagaggactcatat 85  Q
    |||||||||||| | ||||||||||| |||| || ||||||| |||||| |||||||||||    
T  7578601 ggtccttaattactttgatcattcacttgcttatattgtatcctataaataggactcatat 7578661  T

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