View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8836_low_5 (Length: 274)
Name: NF8836_low_5
Description: NF8836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8836_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 29480605 - 29480847
Alignment:
| Q |
16 |
tgaacaagtgaaatggtttaggtaaaactatcccaaatgaagacgtagttaataaggtagtattgagttatgtattttcttcaagttcttttaattaaac |
115 |
Q |
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| T |
29480605 |
tgaacaagtgaaatggtttaggtaaaactatcccaaatgaagacgtagttaataaggtagtgttgagttatgtattttcttcaagttcttttaattaaac |
29480704 |
T |
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| Q |
116 |
gttttaattgaacgagaagaaaatatattcaaaaataacttaaggaaaaattgttagaagtaaaaacataatttcaaccatccatttcttgtgtttttca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29480705 |
gttttaattgaacgagaagaaaatatattcaaaaataacttaagggaaaattgttagaagtaaaaacatagtttcaaccatccatttcttgtgtttttca |
29480804 |
T |
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| Q |
216 |
taaccttaagtagcaaaacaatgatcatataattcgaataaca |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29480805 |
taaccttaagtagcaaaacaatgatcatataattcgaataaca |
29480847 |
T |
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