View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8836_low_6 (Length: 268)
Name: NF8836_low_6
Description: NF8836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8836_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 38287563 - 38287812
Alignment:
| Q |
1 |
aaagaggttcggtcatcaggcaaggataatctaaccaataattgtttaacttaggaatcgaattcggattctttcgaacgattcgtctttgctgaaattc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||| || |
|
|
| T |
38287563 |
aaagaggttcggtcatcagacaaggataatctaatcaataattgtttaacttaagaatcgaattcggattcttccaaacgattcgtcattgctgaaactc |
38287662 |
T |
|
| Q |
101 |
attaaccacttgagttctattgcttgattaggaatgcaaaatttgttactggaaaaaacgacttacatattaacttggacatgtcattnnnnnnntgtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38287663 |
attaaccacttgagttctattgcttgattaggaatgcaaaatttgttactagaaaaaacgacttacatattaacttggacatgtcattaaaaaaatgtta |
38287762 |
T |
|
| Q |
201 |
atttgtacaac-annnnnnnnaattgaataaacaacaatttattagttca |
249 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
38287763 |
atttgtacaacaattttttttaattgaataaacaacaatttattagttca |
38287812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 39844041 - 39843995
Alignment:
| Q |
68 |
attctttcgaacgattcgtctttgctgaaattcattaaccacttgag |
114 |
Q |
| |
|
||||||||||| |||||||||||| |||| |||||| |||||||||| |
|
|
| T |
39844041 |
attctttcgaatgattcgtctttggtgaagttcatttaccacttgag |
39843995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 13043501 - 13043549
Alignment:
| Q |
78 |
acgattcgtctttgctgaaattcattaaccacttgagttctattgcttg |
126 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||| || |||||||| |
|
|
| T |
13043501 |
acgattcgtccttgatgaaactcattaaccacttgagctcaattgcttg |
13043549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 34548585 - 34548528
Alignment:
| Q |
56 |
aatcgaattcggattctttcgaacgattcgtctttgctgaaattcattaaccacttga |
113 |
Q |
| |
|
|||||||||||| || || ||||||| ||||||||| |||| |||||||| ||||||| |
|
|
| T |
34548585 |
aatcgaattcgggttattccgaacgactcgtctttgatgaagttcattaatcacttga |
34548528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 24363853 - 24363805
Alignment:
| Q |
66 |
ggattctttcgaacgattcgtctttgctgaaattcattaaccacttgag |
114 |
Q |
| |
|
|||||||| | ||||||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
24363853 |
ggattcttccaaacgattcgtccttggtgaaattaattaaccacttgag |
24363805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 8509732 - 8509644
Alignment:
| Q |
36 |
caataattgtttaacttaggaatcgaattcggattctttcgaacgattcgtctttgctgaaattcattaaccacttgagttctattgct |
124 |
Q |
| |
|
|||||||||||| | || |||||||||| ||||||| | ||| |||| || ||| ||||| |||||||| |||||||||| |||||| |
|
|
| T |
8509732 |
caataattgttttatctaagaatcgaatttggattctcccaaacaattcatcattgatgaaactcattaactacttgagttcgattgct |
8509644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University