View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8836_low_9 (Length: 250)
Name: NF8836_low_9
Description: NF8836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8836_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 4033458 - 4033217
Alignment:
| Q |
1 |
ttcactctttcaactttctttcggttagatagtctctctgtacttttggcgggatgtggaccccaccatattaaaaacaacttatctttctcataaatac |
100 |
Q |
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| T |
4033458 |
ttcactctttcaactttctttcggttagatagtctctctgtacttttggcgggatgtggaccccaccatattaaaaacaacttatctttctcataaatac |
4033359 |
T |
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| Q |
101 |
accaacttcccattcccctgtttttcattcactcttccataaccatttttctcttcttctaaccttcaaaacggtgtcgtattaacaccacctttcattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4033358 |
accaacttcccattcccctgtttttcattcactcttccataaccatttttctcttcttctaaccttcaaaacggtgtcgtattaacaccacctttcattc |
4033259 |
T |
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| Q |
201 |
aaaaaataacttcaatgaagttatttttctttcttctctgct |
242 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4033258 |
aaaaaataacttcaatgaagttatttttctttcttctttgct |
4033217 |
T |
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