View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8837_high_1 (Length: 409)
Name: NF8837_high_1
Description: NF8837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8837_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 77 - 396
Target Start/End: Complemental strand, 28893075 - 28892745
Alignment:
| Q |
77 |
catgttctatttatcattgaacaagaatcctaaactctttgtacatgtttaaatcgtttcttaaaacagtaacaggaatcaattaggaactatactgtct |
176 |
Q |
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| T |
28893075 |
catgttctatttatcattgaacaagaatcctaaactctttgtacatgtttaaatcgtttcttaaaacagtaacaggaatcaattaggaactatactgtct |
28892976 |
T |
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| Q |
177 |
gacttatattgaaccagtgcaaaaagtagaatatagtgtttgaatgtgggttacttgttggcttgtgatgaatggaatgtttcactttaatgactaaaat |
276 |
Q |
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| T |
28892975 |
gacttatattgaaccagtgcaaaaagtagaatatagtgtttgaatgtgggttacttgttggcttgtgatgaatggaatgtttcactttaatgactaaaat |
28892876 |
T |
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| Q |
277 |
ctcagtacgaatct---------atttaccttgtaaactctgtaaccaaacttggaattgagtaaagaaagttcatctcttcatccaggctgtataaatt |
367 |
Q |
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| T |
28892875 |
ctcagtacgaatctagctataggatttaccttgtaaactctgtaaccaaacttggaattgagtaaagaaagttcatctcttcatccaggctgtataaatt |
28892776 |
T |
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| Q |
368 |
tcctc--tatccatatatcttatcatgatgt |
396 |
Q |
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| T |
28892775 |
tcctctttatccatataccttatcattatgt |
28892745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 112 - 281
Target Start/End: Complemental strand, 28936259 - 28936091
Alignment:
| Q |
112 |
tctttgtacatgtttaaatcgtttcttaaaacagtaacaggaatcaattaggaactatactgtctgacttatattgaaccagtgcaaaaagtagaatata |
211 |
Q |
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| T |
28936259 |
tctttgtacaagtttaaatcatttctgaaaacagtaacaggaatcaatttggccctgtactttttgacttctattgaatcagtgcagaaagtaaaa-ata |
28936161 |
T |
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| Q |
212 |
gtgtttgaatgtgggttacttgttggcttgtgatgaatggaatgtttcactttaatgactaaaatctcag |
281 |
Q |
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| T |
28936160 |
gtttttgaatgtgggttacttattagattgtgatgaatggaatgtttcactttactgaataaaatttcag |
28936091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 28935967 - 28935893
Alignment:
| Q |
315 |
aaacttggaattgagtaaagaaagttcatctcttcatccaggctgtataaatttcctc--tatccatatatcttat |
388 |
Q |
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| T |
28935967 |
aaactcggaattgagtaaagaa-gttcatctctttatccaggcggtataaattttctctttctccatatatcttat |
28935893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 28902966 - 28902882
Alignment:
| Q |
191 |
cagtgcaaaaagtagaatatagtgtttgaatgtgggttacttgttggcttgtgatgaatggaatgtttcactttaatgactaaaa |
275 |
Q |
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| T |
28902966 |
cagtgcaaaaagtaaaatccagttttttaatttgagttacttgttcaactgtgatgaatgcaatgtttcactttaaagaataaaa |
28902882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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