View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8837_high_2 (Length: 291)
Name: NF8837_high_2
Description: NF8837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8837_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 46958239 - 46958497
Alignment:
| Q |
11 |
agattattctgaagcaattcgtccacagtcatttctgcactaaccacatcaactgtgtttccaaagtactcctgcggcaaaggtggttccaatcttagtc |
110 |
Q |
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| T |
46958239 |
agattattctgaagcaattcgtccacagtcatttctgcactaaccacatcaactgtgtttccaaagtactcctgcggcaaaggtggttccaatcttagtc |
46958338 |
T |
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| Q |
111 |
gattatttatagctaacttacaacttgttttttgatcatttgttagtccgcgtgcacgtgtgacacatctccaaacatgtgctgataaagcctggaacga |
210 |
Q |
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| T |
46958339 |
gattatttatagctaacttacaacttgttttttgatcatttgttagtccgcgtgcacgtgtgacacatctccaaacatgtgctgataaagcctggaacga |
46958438 |
T |
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| Q |
211 |
agatatttttgttgtgttaaactccttattcgcctttgctttcagttttacaatagact |
269 |
Q |
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| T |
46958439 |
agatatttttgttgtgttaaactccttattcgcctttgctttcagttttacaatagact |
46958497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 46955391 - 46955644
Alignment:
| Q |
16 |
attctgaagcaattcgtccacagtcatttctgcactaaccacatcaactgtgtttccaaagtactcctgcggcaaaggtggttccaatcttagtcgatta |
115 |
Q |
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| T |
46955391 |
attctcaagcaattcgcctacagtcgtttctgtactcaccacatcaactgagtttccaaagtactcttgcgggagaggtggtttgattcttgatctattg |
46955490 |
T |
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| Q |
116 |
tttatagctaacttacaacttgttttttgatcatttgttagtccgcgtgcacgtgtgacacatctccaaacatgtgctgataaagcctggaacgaagata |
215 |
Q |
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| T |
46955491 |
tttatggctaacttgcaactggttttttgatcatgttttagtcttcgtgcacaagtcacacttctccaaacaaatgccgataaagattggaaggaagata |
46955590 |
T |
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| Q |
216 |
tttttgttgtgttaaactccttattcgcctttgctttcagttttacaatagact |
269 |
Q |
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| T |
46955591 |
tttcatttgtattggattctttattggcctttgctttcagttttgcaatagact |
46955644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 269
Target Start/End: Original strand, 46951138 - 46951316
Alignment:
| Q |
91 |
aggtggttccaatcttagtcgattatttatagctaacttacaacttgttttttgatcatttgttagtccgcgtgcacgtgtgacacatctccaaacatgt |
190 |
Q |
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| T |
46951138 |
aggtggtttcattctcggtcgattatttacggctaacatacaagttgttacttgatcattcgttaggtcgcgagcacgagttatacctctccaaacatgt |
46951237 |
T |
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| Q |
191 |
gctgataaagcctggaacgaagatatttttgttgtgttaaactccttattcgcctttgctttcagttttacaatagact |
269 |
Q |
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| T |
46951238 |
gctgataaagattggaatgaagagattttgtttgtattagactccatattggccttagctttcaactttgcaatagact |
46951316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 46974663 - 46974744
Alignment:
| Q |
177 |
atctccaaacatgtgctgataaagcctggaacgaagatatttttgttgtgttaaactccttattcgcctttgctttcagttt |
258 |
Q |
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| T |
46974663 |
atctccaaactaatgctgataaagattgaaacgaagaaatttttcttgtattagactcttcatttgcctttgctttcagttt |
46974744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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