View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8837_high_4 (Length: 242)
Name: NF8837_high_4
Description: NF8837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8837_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 25764245 - 25764022
Alignment:
| Q |
1 |
taatatttgcaaatggcaatgattatgcagtgtctctcactgaaaaatatgagatggaagnnnnnnncatattgacaaatctaccagttgatgtgttgga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25764245 |
taatatttgcaaatggcaatgattatgcagtgtctctcactgaaaaatatgagatggaagaaaaaaacatattgacaaatctaccagttgatgtgttgga |
25764146 |
T |
|
| Q |
101 |
acggattatgaagcgtttggctcttaaagattaccttagagtgagagcaatttgccgttcttgtcgggaaacagtttccaatatcattcaaaacaagcat |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25764145 |
acggattatgaagcgtttgcctcttaaagattaccttagattgagagcgatttgtcgttcttgtcgggaaacagtttccaatatcattgaaaacaagcat |
25764046 |
T |
|
| Q |
201 |
tgctccccattacctgaactgcct |
224 |
Q |
| |
|
|||||||| ||||||||||||||| |
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|
| T |
25764045 |
tgctcccctttacctgaactgcct |
25764022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 70 - 224
Target Start/End: Complemental strand, 25756223 - 25756069
Alignment:
| Q |
70 |
tattgacaaatctaccagttgatgtgttggaacggattatgaagcgtttggctcttaaagattaccttagagtgagagcaatttgccgttcttgtcggga |
169 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25756223 |
tattgacaaatctaccagttgatgtgttggaaatgattatgaagcgtttgcctcttaaagattaccttagattgagagcaatttgccgttcttgtcggga |
25756124 |
T |
|
| Q |
170 |
aacagtttccaatatcattcaaaacaagcattgctccccattacctgaactgcct |
224 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |
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| T |
25756123 |
aacagtttccaatatcattgaaaacaagcattgctgcccattacctgaaatgcct |
25756069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 25733859 - 25733630
Alignment:
| Q |
1 |
taatatttgcaaatggcaatgattatgcagtgtctctcactgaaaaatatgagatggaagnnnnnnncatattgacaaa------tctaccagttgatgt |
94 |
Q |
| |
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|||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||| |||||||| ||| |||||| | |||||| |
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| T |
25733859 |
taatatttgcaagtggcaatgattatgcagtggctctcactcaaaaatacgagatggaagaaaaaaccatattgaaaaaaccatatctacccgctgatgt |
25733760 |
T |
|
| Q |
95 |
gttggaacggattatgaagcgtttggctcttaaagattaccttagagtgagagcaatttgccgttcttgtcgggaaacagtttccaatatcattcaaaac |
194 |
Q |
| |
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|||||||| |||||||||||||||| | || ||||||||||||||| ||||||||||||||||||||||| || ||| |||||| ||||||||| ||||| |
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| T |
25733759 |
gttggaactgattatgaagcgtttgcccctaaaagattaccttagattgagagcaatttgccgttcttgtaggaaaatagtttcgaatatcattgaaaac |
25733660 |
T |
|
| Q |
195 |
aagcattgctccccattacctgaactgcct |
224 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
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|
| T |
25733659 |
aagcattgctgcccattacctgaactgcct |
25733630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 25741560 - 25741331
Alignment:
| Q |
1 |
taatatttgcaaatggcaatgattatgcagtgtctctcactgaaaaatatgagatggaagnnnnnnncatattgacaaa------tctaccagttgatgt |
94 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||| |||||||| ||| |||||| |||||||| |
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| T |
25741560 |
taatatttgcaagtggcaatgattatgcagtggctctcactcaaaaatacgagatggaagaaaaaaccatattgaaaaaaccatatctacccgttgatgt |
25741461 |
T |
|
| Q |
95 |
gttggaacggattatgaagcgtttggctcttaaagattaccttagagtgagagcaatttgccgttcttgtcgggaaacagtttccaatatcattcaaaac |
194 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || ||| |||||| ||||||||| ||||| |
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|
| T |
25741460 |
gttggaattgattatgaagcgtttgcctcttaaagattaccttagattgagagcaatttgccgttcttgtaggaaaatagtttcgaatatcattgaaaac |
25741361 |
T |
|
| Q |
195 |
aagcattgctccccattacctgaactgcct |
224 |
Q |
| |
|
|| ||||||| ||||||||| ||||||||| |
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|
| T |
25741360 |
aaacattgctgcccattaccagaactgcct |
25741331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 70 - 224
Target Start/End: Complemental strand, 25747655 - 25747501
Alignment:
| Q |
70 |
tattgacaaatctaccagttgatgtgttggaacggattatgaagcgtttggctcttaaagattaccttagagtgagagcaatttgccgttcttgtcggga |
169 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || | |
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| T |
25747655 |
tattgacaaatctaccagtcgatgtgttggagatgattatgaagcgtttgcctcttaaagattaccttagattgagagcaatttgccgttcttgtaggaa |
25747556 |
T |
|
| Q |
170 |
aacagtttccaatatcattcaaaacaagcattgctccccattacctgaactgcct |
224 |
Q |
| |
|
||| |||||||| || ||| ||||||||||||||| ||| ||||||||||||||| |
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|
| T |
25747555 |
aacggtttccaaaatgattgaaaacaagcattgctgccctttacctgaactgcct |
25747501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 223
Target Start/End: Complemental strand, 40462815 - 40462663
Alignment:
| Q |
71 |
attgacaaatctaccagttgatgtgttggaacggattatgaagcgtttggctcttaaagattaccttagagtgagagcaatttgccgttcttgtcgggaa |
170 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||| ||||||||||| | |||| ||||| |||| | | |||||||| || |||||||| || || |
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| T |
40462815 |
attgacaaatctaccagtcgatgtgtttgagttgattctgaagcgtttgccccttagagattgccttggtttaagagcaatatgtcgttcttgcaggaaa |
40462716 |
T |
|
| Q |
171 |
acagtttccaatatcattcaaaacaagcattgctccccattacctgaactgcc |
223 |
Q |
| |
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|| ||||| ||| ||||| ||||||| |||| || || |||||||||||||| |
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| T |
40462715 |
actgtttctaatgtcattgaaaacaaacattactgccatttacctgaactgcc |
40462663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 204
Target Start/End: Original strand, 8294222 - 8294357
Alignment:
| Q |
71 |
attgacaaatctaccagttgatgtgttggaacggattatgaagcgtttggctcttaaagattaccttagagtgagagcaatttgccgttcttgtcgggaa |
170 |
Q |
| |
|
||||| ||||||||| ||||||||||||||| ||||||||||||||| | |||||||||| ||||||| | ||||||| |||||||||||| || || |
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| T |
8294222 |
attgataaatctacctgttgatgtgttggaattgattatgaagcgttttccccttaaagattgccttagattacgagcaatatgccgttcttgtaggaaa |
8294321 |
T |
|
| Q |
171 |
--acagtttccaatatcattcaaaacaagcattgct |
204 |
Q |
| |
|
||| |||| ||| ||||| ||||||||||||||| |
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|
| T |
8294322 |
acacaatttctaatgtcattgaaaacaagcattgct |
8294357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 30148691 - 30148848
Alignment:
| Q |
69 |
atattgacaaatctaccagttgatgtgttggaacggattat---gaagcgtttggctcttaaagattaccttagagtgagagcaatttgccgttcttgtc |
165 |
Q |
| |
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||||||||||||||||| || |||||||||||| ||| || ||| || ||| | |||||||||| ||| || | || |||| || ||||||||| |
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| T |
30148691 |
atattgacaaatctaccggtcgatgtgttggaattgatgattctgaaccgcttgccccttaaagattggcttggattaagggcaacctgtcgttcttgta |
30148790 |
T |
|
| Q |
166 |
gggaaacagtttccaatatcattcaaaacaagcattgctccccattacctgaactgcc |
223 |
Q |
| |
|
|| |||||||||| ||| ||||| ||||||||| ||||| || |||||||||||||| |
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|
| T |
30148791 |
ggaaaacagtttctaatttcattgaaaacaagcgttgctgccatttacctgaactgcc |
30148848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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