View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8837_low_11 (Length: 231)
Name: NF8837_low_11
Description: NF8837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8837_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 4373369 - 4373563
Alignment:
| Q |
16 |
attatactatagtaccacctagtttcttctcagcttggtgttgtttgttttcgggagattcaaatttgaatttctctaaatacagagcttcttctgctac |
115 |
Q |
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| T |
4373369 |
attatactatagtaccacctagtttcttctcagcttggtgttgtttgtttttgggagattcaaatttgaatttctctaaatacagagcttcttctgctac |
4373468 |
T |
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| Q |
116 |
atgtgctttatcttctttgtgcatgtggaatttggggaaattctgaaagtgttgtgcttgatgagttttgaagaaatttagtccgtgttgtcaat |
210 |
Q |
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| T |
4373469 |
atgtgctttatcttctttgtgcatgtggaattttgggaaattctgaaagtgttgtgcttgatgagttttgaagaaatttagtccgtgttgtcaat |
4373563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 4381846 - 4381910
Alignment:
| Q |
146 |
tttggggaaattctgaaagtgttgtgcttgatgagttttgaagaaatttagtccgtgttgtcaat |
210 |
Q |
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| T |
4381846 |
tttgggaaaattctgaaagtgctgttcttgatgagttttgaagaaattcagttcgtgttgtcaat |
4381910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 4354170 - 4354257
Alignment:
| Q |
100 |
gagcttcttctgctacatgtgctttatcttctttgtgcatgtggaatttggggaaattctgaaagtgttgtgcttgatgagttttgaa |
187 |
Q |
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| T |
4354170 |
gagctttttctgctacatttgcttaattttctttgtgcatctggaatttgggaaaattctgaacttgtggtggttgttgagttttgaa |
4354257 |
T |
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