View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8837_low_2 (Length: 405)
Name: NF8837_low_2
Description: NF8837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8837_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 46169858 - 46169482
Alignment:
| Q |
1 |
agatatgtaaaacttggagaaaaaatattgtagtgatttaaataataaacactcaatgttctgttattagcaatcaacatcagctcaaatagatcatagc |
100 |
Q |
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| T |
46169858 |
agatatgtaaaacttggagaaaaaatattgtagtgatttaaataataaacactcaatgttctgttattagcaatcaacatcagctcaaatagatcatagc |
46169759 |
T |
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| Q |
101 |
cacaactcacaatcaaggccaacat--aaatttagattttgaaagatcatgaaggggtgttgttttttctgttaaaatggtctttaagaaacatatcaac |
198 |
Q |
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| T |
46169758 |
cacaactcacaatcaaggccaacattaaaatttagattttgaaagatcatgaaggggtgttgttttttctgttaaaatggtctttaagaaacatatcaac |
46169659 |
T |
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| Q |
199 |
atgtcatttggtcattctcaataaccatgccaatgttttaggactgaattaacttcttctcttttattaacgtaaacaataaattgatcaacaatgccaa |
298 |
Q |
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| T |
46169658 |
atgtcatttggtcattctcaatagccatgccagtgttttaggactgaattaacttcttctcttttattaacgtaaacaataaattg-------atgccaa |
46169566 |
T |
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| Q |
299 |
tgctggcttgtgagcagaaaaaatcaatgaatatgaatttggaa-ctaataatgaggtgttaaatgttaatgggaagctaatggt |
382 |
Q |
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| T |
46169565 |
tgctggcttgtgagcagaaaaaatcaatgaatatgaatttggaacctaataatgaggtgttaaatgttaat-ggaagctaatggt |
46169482 |
T |
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