View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8837_low_5 (Length: 275)
Name: NF8837_low_5
Description: NF8837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8837_low_5 |
 | |
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| [»] scaffold0764 (1 HSPs) |
| | |
|
| [»] scaffold0313 (2 HSPs) |
| | |
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| [»] scaffold1531 (1 HSPs) |
| | |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 1977032 - 1977311
Alignment:
| Q |
1 |
caatatcttggaaaagatttacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttccttttcaggagagttttcttc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1977032 |
caatatcttgaaaaagatttacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttccttttcaggagagttttcttc |
1977131 |
T |
|
| Q |
101 |
ctcttgtctttgaatgcttgaaagattcctga----------ctttctcttcttacttggcttcttaacattctgaactgagtgtcttttgacagagcta |
190 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1977132 |
ctcttgtctttgaatgcttgaaagatttctgactttttcaagctttctcttcttacttggcttcttaacattctgaactgagtgtcttttgacagagcta |
1977231 |
T |
|
| Q |
191 |
gttgtttgagaggacacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttgatgtccatctcat |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
1977232 |
gttgtttgagaggacacaggagtaggcatgttggaggtggttatgtgaagttgagctagagtttttgatgtgaatctcat |
1977311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 1984398 - 1984677
Alignment:
| Q |
1 |
caatatcttggaaaagatttacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttccttttcaggagagttttcttc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1984398 |
caatatcttgaaaaagatttacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttccttttcaggagagttttcttc |
1984497 |
T |
|
| Q |
101 |
ctcttgtctttgaatgcttgaaagattcctga----------ctttctcttcttacttggcttcttaacattctgaactgagtgtcttttgacagagcta |
190 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1984498 |
ctcttgtctttgaatgcttgaaagatttctgactttttcaagctttctcttcttacttggcttcttaacattctgaactgagtgtcttttgacagagcta |
1984597 |
T |
|
| Q |
191 |
gttgtttgagaggacacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttgatgtccatctcat |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
1984598 |
gttgtttgagaggacacaggagtaggcatgttggaggtggttatgtgaagttgagctagagtttttgatgtgaatctcat |
1984677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 20955920 - 20955641
Alignment:
| Q |
1 |
caatatcttggaaaagatttacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttccttttcaggagagttttcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
20955920 |
caatatcttggaaaagatttacatcagaggattcaccatcctttggtggggaatcagccatttcatcatcagactcttctttttcagaagagttttcttc |
20955821 |
T |
|
| Q |
101 |
ctcttgtctttgaatgcttgaaagattcctgactt----------tctcttcttacttggcttcttaacattctgaactgagtgtcttttgacagagcta |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20955820 |
ctcttgtctttgaatgcttgaaagattcctgactttctcaagctttctcttcttacttggcttcttaacattctgaactgagtgtcttttgacagagcta |
20955721 |
T |
|
| Q |
191 |
gttgtttgagaggacacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttgatgtccatctcat |
270 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20955720 |
gttgtttgagaagacacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttgatgtgaatctcat |
20955641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 27162268 - 27162547
Alignment:
| Q |
1 |
caatatcttggaaaagatttacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttccttttcaggagagttttcttc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27162268 |
caatatcttggaaaagatttatatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttctttttcaggagagttttcttc |
27162367 |
T |
|
| Q |
101 |
ctcttgtctttgaatgcttgaaagattcctga----------ctttctcttcttacttggcttcttaacattctgaactgagtgtcttttgacagagcta |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27162368 |
ctcttgtctttgaatgcttgaaagattcctgactttttcaagctttctcttcttacttggcttcttaacattctgaactgagtgtcttttgacagagcta |
27162467 |
T |
|
| Q |
191 |
gttgtttgagaggacacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttgatgtccatctcat |
270 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27162468 |
gttgtttgagaagacacaggagtaggcatgctggaggtggttatgtggagttgagctagagtttttgatgtgaatctcat |
27162547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 22911160 - 22911281
Alignment:
| Q |
137 |
ctcttcttacttggcttcttaacattctgaactgagtgtcttttgacagagctagttgtttgagaggacacaggagtaggcatgttggaggtggttatgt |
236 |
Q |
| |
|
||||||||||||| |||||||||||||||| || ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22911160 |
ctcttcttacttgtcttcttaacattctgagctaagtgtctcttgacatagctagttgtttgtgaggacacaggagtaggcatgttggaggtggttatgt |
22911259 |
T |
|
| Q |
237 |
ggagttgagctagagtttttga |
258 |
Q |
| |
|
| |||||||| || |||||||| |
|
|
| T |
22911260 |
gaagttgagcaagggtttttga |
22911281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0764 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0764
Description:
Target: scaffold0764; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 3147 - 3426
Alignment:
| Q |
1 |
caatatcttggaaaagatttacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttccttttcaggagagttttcttc |
100 |
Q |
| |
|
||||||||||||| ||||| ||| ||| ||||||| | |||||||||||||||||||| || || |||||||| | || || ||||||||||||||||| |
|
|
| T |
3147 |
caatatcttggaagagattaacagcagtgggttcatcctcctttggtggggaatcagctatctcttcatcagatgcctctttgtcaggagagttttcttc |
3246 |
T |
|
| Q |
101 |
ctcttgtctttgaatgcttgaaagattcctgacttt----------ctcttcttacttggcttcttaacattctgaactgagtgtcttttgacagagcta |
190 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3247 |
ttcttgtctctgaatgcttgaaagatttctgactttttcaagcttcctcttcttacttggcttcttaacattctgagctgagtgtcttttgacagagctg |
3346 |
T |
|
| Q |
191 |
gttgtttgagaggacacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttgatgtccatctcat |
270 |
Q |
| |
|
||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||| |
|
|
| T |
3347 |
gttgtctgtgaagacactggagtaggcatgttggaggtggttatgtgaagttgagctagggtctttgatgtgaatctcat |
3426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: scaffold0313
Description:
Target: scaffold0313; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 3468 - 3189
Alignment:
| Q |
1 |
caatatcttggaaaagatttacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttccttttcaggagagttttcttc |
100 |
Q |
| |
|
||||||||||||| ||||| ||| ||| ||||||| | |||||||||||||||||||| || || |||||||| | || || ||||||||||||||||| |
|
|
| T |
3468 |
caatatcttggaagagattaacagcagtgggttcatcctcctttggtggggaatcagctatctcttcatcagatgcctctttgtcaggagagttttcttc |
3369 |
T |
|
| Q |
101 |
ctcttgtctttgaatgcttgaaagattcctgacttt----------ctcttcttacttggcttcttaacattctgaactgagtgtcttttgacagagcta |
190 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3368 |
ttcttgtctctgaatgcttgaaagatttctgactttttcaagcttcctcttcttacttggcttcttaacattctgagctgagtgtcttttgacagagctg |
3269 |
T |
|
| Q |
191 |
gttgtttgagaggacacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttgatgtccatctcat |
270 |
Q |
| |
|
||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||| |
|
|
| T |
3268 |
gttgtctgtgaagacactggagtaggcatgttggaggtggttatgtgaagttgagctagggtctttgatgtgaatctcat |
3189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 17625 - 17346
Alignment:
| Q |
1 |
caatatcttggaaaagatttacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttccttttcaggagagttttcttc |
100 |
Q |
| |
|
||||||||||||| ||||| ||| ||| ||||||| | |||||||||||||||||||| || || |||||||| | || || ||||||||||||||||| |
|
|
| T |
17625 |
caatatcttggaagagattaacagcagtgggttcatcctcctttggtggggaatcagctatctcttcatcagatgcctctttgtcaggagagttttcttc |
17526 |
T |
|
| Q |
101 |
ctcttgtctttgaatgcttgaaagattcctgacttt----------ctcttcttacttggcttcttaacattctgaactgagtgtcttttgacagagcta |
190 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17525 |
ttcttgtctctgaatgcttgaaagatttctgactttttcaagcttcctcttcttacttggcttcttaacattctgagctgagtgtcttttgacagagctg |
17426 |
T |
|
| Q |
191 |
gttgtttgagaggacacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttgatgtccatctcat |
270 |
Q |
| |
|
||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||| |
|
|
| T |
17425 |
gttgtctgtgaagacactggagtaggcatgttggaggtggttatgtgaagttgagctagggtctttgatgtgaatctcat |
17346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1531 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold1531
Description:
Target: scaffold1531; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 1227 - 966
Alignment:
| Q |
7 |
cttggaaaagatttacatcagagggttcaccatcctttggtggggaatcagccatttcatcatcagactcttccttttcaggagagttttcttcctcttg |
106 |
Q |
| |
|
||||||| ||||| ||| ||| |||||||||||||||| |||| || |||||||| ||||||| ||| |||| |||| |||||||| | || | | |
|
|
| T |
1227 |
cttggaagagattaacagcagtgggttcaccatcctttagtggagagtcagccatctcatcattagatgcttctttttagggagagttcttctctttatc |
1128 |
T |
|
| Q |
107 |
tctttgaatgcttgaaagattcctgactttctc----------ttcttacttggcttcttaacattctgaactgagtgtcttttgacagagctagttgtt |
196 |
Q |
| |
|
||| |||| |||||| | |||||||||||||| |||||| ||| |||||| ||||||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
1127 |
tctctgaacgcttgataagttcctgactttctcaagtttcctcttcttatttgacttcttgacattctgagctgagtgtctcttgaaagagctagttgtt |
1028 |
T |
|
| Q |
197 |
tgagaggacacaggagtaggcatgttggaggtggttatgtggagttgagctagagtttttga |
258 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
1027 |
tgagaagacacaggggtaggcatgttggaggtggttatgttaagttgagcgagagtctttga |
966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 246
Target Start/End: Original strand, 43053 - 43159
Alignment:
| Q |
140 |
ttcttacttggcttcttaacattctgaactgagtgtcttttgacagagctagttgtttgagaggacacaggagtaggcatgttggaggtggttatgtgga |
239 |
Q |
| |
|
||||| ||| |||||||| | ||||| |||||||||| |||| ||||| ||||| || |||| ||| ||||||||||||||| |||||||||||| | |
|
|
| T |
43053 |
ttcttccttagcttcttatccttctgttctgagtgtctcttgatagagccagttgcttctcaggatacatgagtaggcatgttggtggtggttatgtgaa |
43152 |
T |
|
| Q |
240 |
gttgagc |
246 |
Q |
| |
|
||||||| |
|
|
| T |
43153 |
gttgagc |
43159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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