View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8837_low_8 (Length: 242)
Name: NF8837_low_8
Description: NF8837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8837_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 40572930 - 40573162
Alignment:
| Q |
1 |
taaatgatgttaatatttataagtagataccggtcaaaaaatacatttataagagcaannnnnnn---gggtcggtagactttatgagagtataaa-gga |
96 |
Q |
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| T |
40572930 |
taaatgatgttaatatttataagtagataccggtcaaaaaatacatttataagagcactttttttttgggttcggtagacttcatgagagtataaaagga |
40573029 |
T |
|
| Q |
97 |
acaaatatgattaaatat----ataaaaaatgtaaaagatcaatgattaaggaggagggagtaaacaagatacatatataacacaatcaaattatcttta |
192 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40573030 |
acaaatatgattaaatatatatataaaaaatgtaaaagatcaatgattaaggaggagggagtaaacaagatacatatataacacaatc-aattatcttta |
40573128 |
T |
|
| Q |
193 |
aaatgttagaattgagatacctatattaatattt |
226 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
40573129 |
aaatgttagaattgagatacctatattaatattt |
40573162 |
T |
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