View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8837_low_9 (Length: 240)
Name: NF8837_low_9
Description: NF8837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8837_low_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 55825041 - 55824821
Alignment:
| Q |
20 |
tagtacatcttcaccgatatcaaattgttcagataattcttcgatgttgagcatctagaactgaaagcagagattcaaaagctaaatgggaaagaaaaca |
119 |
Q |
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| T |
55825041 |
tagtacatcttcaccgatatcaaattgttcagataattcttcgatgttgagcatctagaactgaaagcagagattcaaaagctaaatgggaaagaaaaca |
55824942 |
T |
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| Q |
120 |
gaatgattagttcttgcgttggctttctgcctttccgttggaagaaaagaagactccttgcactgaaagatcacttattataagcagtaattcttccata |
219 |
Q |
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| T |
55824941 |
gaatgattggttcttgcgttggctttctgcctttccgttggaagaaaagaagactccttgcactgaaagatcacttattataagcagtaattcttccata |
55824842 |
T |
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| Q |
220 |
caatttggaaaccatgttaat |
240 |
Q |
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||||||||||||||||||||| |
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| T |
55824841 |
caatttggaaaccatgttaat |
55824821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 56149940 - 56150160
Alignment:
| Q |
20 |
tagtacatcttcaccgatatcaaattgttcagataattcttcgatgttgagcatctagaactgaaagcagagattcaaaagctaaatgggaaagaaaaca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149940 |
tagtacatcttcaccgatatcaaattgttcagataattcttcgatgttgagcatctagaactgaaagcagagattcaaaagctaaatgggaaagaaaaca |
56150039 |
T |
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| Q |
120 |
gaatgattagttcttgcgttggctttctgcctttccgttggaagaaaagaagactccttgcactgaaagatcacttattataagcagtaattcttccata |
219 |
Q |
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| T |
56150040 |
gaatgattggttcttgcgttggctttctgcctttccgttggaagaaaagaagactccttgcactgaaagatcacttattataagcagtaattcttccata |
56150139 |
T |
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| Q |
220 |
caatttggaaaccatgttaat |
240 |
Q |
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| T |
56150140 |
caatttggaaaccatgttaat |
56150160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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