View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8839_high_11 (Length: 243)
Name: NF8839_high_11
Description: NF8839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8839_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 6619507 - 6619563
Alignment:
| Q |
169 |
ctctccatcatcatcaccatcttcaccagcaacatctgcatcagaatccggaggatt |
225 |
Q |
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| T |
6619507 |
ctctccatcatcatcaccatcttcaccagcaacatctgcatcagaatccggaggatt |
6619563 |
T |
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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 6619322 - 6619420
Alignment:
| Q |
1 |
acacactcaagtattcaaattttcaactcaagtcaacaaaat------------tcatctcaaaatctcataacaaaacatgcacagttaaatcacacc |
87 |
Q |
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| T |
6619322 |
acacactcaagtattcaaattttcaactcaagtcagcaaaattcaacttcaaattcatctcaaaatctcataacaaaacatgcacagttaaatcacacc |
6619420 |
T |
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