View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8839_high_2 (Length: 498)
Name: NF8839_high_2
Description: NF8839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8839_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 480
Target Start/End: Original strand, 26315455 - 26315930
Alignment:
| Q |
12 |
gataattctagggtgtataggaatcctcttcaaaacttgcacaatgtcttctattgtttttccattagaatgaagctccatcatcatcctatcctataaa |
111 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26315455 |
gatagttctagggtgtataggaatcatcttcaaaacttgcacaatgtcttctattgtttttccattagaatgaagctccatcatcatcctatcctataaa |
26315554 |
T |
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| Q |
112 |
gnnnnnnnnnnnnnnnnnnngagggttagataatatttatgtcatataaacacaatgtagattatattatattatatta-----gaatagattagagggg |
206 |
Q |
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| T |
26315555 |
gcaaaaacaacaaaacaaaagagggttagttaatatttatgtcatataaacacaatgtagattatattatattatattatattagaatagattagagggg |
26315654 |
T |
|
| Q |
207 |
gcaaagagatatatcatttgnnnnnnnntagagcataaaacacaaatgttcgagtaaatcaaaggcttaccatgagatagttcaatggcatgatgggaaa |
306 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26315655 |
gcaaaaagatatatcatttgaaaaaaaatagagcataaaacacaaatgttcgagtaaatcaaaggcttaccatgagatagttcaatggcatggtgggaaa |
26315754 |
T |
|
| Q |
307 |
gagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaaccactacaata |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26315755 |
gagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcaataatggttttgtcaaagtcgaaaaccactacaata |
26315854 |
T |
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| Q |
407 |
atagccata--atggtgacagagaaatattttgtttgtttttgagaaaaccaagaatttattatactacaatacgt |
480 |
Q |
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| T |
26315855 |
ctagccataatatggtgacaaagaaatattttgtttgtttttaaaaaaaccaagaatttattatactgcaatacgt |
26315930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 243 - 417
Target Start/End: Original strand, 43110799 - 43110973
Alignment:
| Q |
243 |
aaaacacaaatgttcgagtaaatcaaaggcttaccatgagatagttcaatggcatgatgggaaagagttgattgaacaaatcattgaaacctaattcatc |
342 |
Q |
| |
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||||||||||| ||||| | || ||| ||||||||||||| |||| |||||||| |||||| |||| ||||||||||||| ||||||| |||||||| |
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| T |
43110799 |
aaaacacaaatcttcgaacatataaaaatcttaccatgagattgttccatggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatc |
43110898 |
T |
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| Q |
343 |
aacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaaccactacaataatagccataat |
417 |
Q |
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| T |
43110899 |
aacaacccagttatcactgtcacattcaactatggttttgtcaaagtcaaaaaccacaacaatattagccataat |
43110973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 43110575 - 43110670
Alignment:
| Q |
16 |
attctagggtgtataggaatcctcttcaaaacttgcacaatgtcttctattgtttttccattagaatgaagctccatcatcatcctatcctataaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43110575 |
attctagggtgtataggaatcctcttcaaaacttgcacaatgtcttcaatggtttttccattagaattaagctccatcatcatcctatcctataaa |
43110670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 274 - 396
Target Start/End: Complemental strand, 5269026 - 5268904
Alignment:
| Q |
274 |
taccatgagatagttcaatggcatgatgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgata |
373 |
Q |
| |
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|||||||||| | || || ||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| || ||||| || || |
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| T |
5269026 |
taccatgagagaattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaacaacccaattatcactatcacaatcaatt |
5268927 |
T |
|
| Q |
374 |
atggttttgtcaaagtcgaaaac |
396 |
Q |
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|||||||| || ||||||||||| |
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| T |
5268926 |
atggttttatcgaagtcgaaaac |
5268904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 274 - 406
Target Start/End: Complemental strand, 5249791 - 5249659
Alignment:
| Q |
274 |
taccatgagatagttcaatggcatgatgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgata |
373 |
Q |
| |
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|||||||||| | ||| | ||||| |||||| ||| ||||||||||||||| ||||||| |||||||||| |||||| ||||| |||||||| || || |
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| T |
5249791 |
taccatgagagaattccaaggcatagtgggaaggagctgattgaacaaatcagtgaaacccaattcatcaataacccaattatcactgtcacaatcaatt |
5249692 |
T |
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| Q |
374 |
atggttttgtcaaagtcgaaaaccactacaata |
406 |
Q |
| |
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|||||||| ||||| || ||||| || |||||| |
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| T |
5249691 |
atggttttatcaaaatcaaaaactacaacaata |
5249659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 396
Target Start/End: Original strand, 5276756 - 5276850
Alignment:
| Q |
302 |
ggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaac |
396 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| |||||||||| | ||| ||||| |||||||| || || || ||||||||||| || ||||| |
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| T |
5276756 |
ggaaggagttgattgaacaaatcagtgaaacccaattcatcaatcaaccaattatcactgtcacaatcaatgatcgttttgtcaaaatcaaaaac |
5276850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 395
Target Start/End: Original strand, 5272783 - 5272878
Alignment:
| Q |
300 |
tgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcgataatggttttgtcaaagtcgaaaa |
395 |
Q |
| |
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|||||| ||| |||||||||||||| ||||||| |||||||||| | ||| ||||| || ||||| || || ||||||||||||||||| |||| |
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| T |
5272783 |
tgggaaggagctgattgaacaaatcggtgaaacccaattcatcaatcaaccaattatcactatcacaatcaatgatggttttgtcaaagtcaaaaa |
5272878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 5249978 - 5249925
Alignment:
| Q |
53 |
caatgtcttctattgtttttccattagaatgaagctccatcatcatcctatcct |
106 |
Q |
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| T |
5249978 |
caatctcttcaatggttttaccatttgaatgaatctccatcatcatcctatcct |
5249925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 19569227 - 19569168
Alignment:
| Q |
307 |
gagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcaca |
366 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| |||| ||||| || ||||| |
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|
| T |
19569227 |
gagttgattgaacaaatcgatgaaacctaattcatcaacatcccaattatcactatcaca |
19569168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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