View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8839_high_4 (Length: 452)
Name: NF8839_high_4
Description: NF8839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8839_high_4 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 14 - 452
Target Start/End: Complemental strand, 46824613 - 46824176
Alignment:
| Q |
14 |
ctgtgacatctaaaatcgcgaaaaccttaacacggcggcgaccgagaccgcgaccgttagttaaaacctaacccttgatcaaattccggattaacaatgt |
113 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46824613 |
ctgtaacatctgaaatcgcgaaaacattaacacggccgcgaccgagaccgcaaccgttagttaaaacctaaccctcgatcaaattccggattaacaatgt |
46824514 |
T |
|
| Q |
114 |
ccatttttt-ccgaaaaccggannnnnnnnnn--aaggaagaattccaacaaccaacccatcaaaggaaataaaaaagttctctagagatgataaccagt |
210 |
Q |
| |
|
||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46824513 |
ccatttttttccgaaaaccggatgtttaacaatgaaaaaagaattccaacaaccaacccatcaaaggaaataaaaaagttctctagagatgataacctgt |
46824414 |
T |
|
| Q |
211 |
tttcttttctttcgttttcaagaaattttagatgcagtcatcattaataaatactcaaacatttgaattttaaattgaaatctaccaatgtaagcagtat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
46824413 |
tttcttttctttcgttttcaagaaattttagatgcagtcatcattaataaatactcaaacatttgaattttaaattgaaatttaccaatgtcagcagtat |
46824314 |
T |
|
| Q |
311 |
taataatgtataggtagaatgtttccatgtggttaattttcaaacaataaatggaaagaggatatataagagcaaacgaagaggacactgaaactagtaa |
410 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
46824313 |
taataatgtataggtagaatgtctccatgtggttaattttcaaacaataaatggaaagagg----ataagagcaaacaaagaggacactgaaactagtaa |
46824218 |
T |
|
| Q |
411 |
ctttaacattttcacagtgcagagagtcacagagttccactc |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46824217 |
ctttaacattttcacagtgcagagagtcacagagttccactc |
46824176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 21315530 - 21315474
Alignment:
| Q |
26 |
aaatcgcgaaaaccttaacacggcggcgaccgagaccgcgaccgttagttaaaacct |
82 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||||| |||||||| ||||||||| |
|
|
| T |
21315530 |
aaatcgcgaaaaccttaacgcgaccgcgaccgagaccgtgaccgttatttaaaacct |
21315474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University