View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8839_low_10 (Length: 307)
Name: NF8839_low_10
Description: NF8839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8839_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 28062924 - 28062636
Alignment:
| Q |
1 |
ttgaccacgaaacgacagcgtcagctgatcagattcatcaaaactttggagtgcgaagtcaggattttcactgccgttgccgtaaacagcatcggagttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28062924 |
ttgaccacgaaacgacagcgtcagctgatcagattcatcaaaactttgaagtgcgaattcaggattttcactgccgttgccgtaaacagcatcggagttg |
28062825 |
T |
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| Q |
101 |
gaatcatccataccgtgagtttcgtattgaatttgatgttgagcatcgacgccggcgtcggggccggaaccgtcgtcgctttcgccagcggtgattggta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28062824 |
gaatcatccataccgtgagtttcgtattgaatttgatgttgagcgtcgacgccggcgtcggggccggaaccgtcgtcgctttcgccagcggtgattggta |
28062725 |
T |
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| Q |
201 |
cggtggtgttcaagggttgagagtgatcgtacattggtggttccattgcagcaaagagagaatttgggaagagattgaaaccctgattt |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28062724 |
cggtggtgttcaagggttgagagtgatcgtacattggtggttccattgcagcaaagagagaatttgggaagagattgaaaccctgattt |
28062636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 26903056 - 26902886
Alignment:
| Q |
1 |
ttgaccacgaaacgacagcgtcagctgatcagattcatcaaaactttggagtgcgaagtcaggattttcactgccgttgccgtaaacagcatcggagttg |
100 |
Q |
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|||| |||||||||||||||| | ||||||||| |||||||| | ||| |||| ||| ||| ||||||||| || || || |||||| ||||| | ||| |
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| T |
26903056 |
ttgatcacgaaacgacagcgtaaactgatcagactcatcaaagcgttgaagtgtgaattcatgattttcacctccattcccataaacaacatcgaatttg |
26902957 |
T |
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| Q |
101 |
gaatcatccataccgtgagtttcgtattgaatttgatgttgagcatcgacgccggcgtcggggccggaacc |
171 |
Q |
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|||||||| | | | ||||||||||||||||||| | ||||||| |||||||| || | |||||||||||| |
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| T |
26902956 |
gaatcatctagagcatgagtttcgtattgaatttaacgttgagcgtcgacgcccgcattggggccggaacc |
26902886 |
T |
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