View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8839_low_12 (Length: 302)
Name: NF8839_low_12
Description: NF8839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8839_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 38675534 - 38675806
Alignment:
| Q |
18 |
caaccttggtcccaatcctataaataccctttgcctcttacaacacacattctcctatccctatccattttccatccactctatttacccatcttcaaaa |
117 |
Q |
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| T |
38675534 |
caaccttggtcccaatcctataaataccctttgcctcttacaacacacattctcctatccctatccattttccatccactctatttactcatcttcaaaa |
38675633 |
T |
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| Q |
118 |
caaaaaccttcattattctacttctgaatctgcaaaataattctttttcctgttagttccttgtatcctatatacttttttcattttattttgtatactt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38675634 |
caaaaaccttcattattctacttctgaatctgcaaaataattctttttcctgttagttccttgtatcctatatacttttttcattttattttgtatactt |
38675733 |
T |
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| Q |
218 |
atccatag-nnnnnnnnnctttctttctaattgatattatctatggttattgtttattgctctgtttgatgtc |
289 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38675734 |
atccatagttttttttttctttctttctaattgatattatctatggttattgtttattgctctgtttggtgtc |
38675806 |
T |
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