View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8839_low_15 (Length: 267)
Name: NF8839_low_15
Description: NF8839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8839_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 30472367 - 30472263
Alignment:
| Q |
14 |
cacaaaaacaagtaaaaggtgacgtagataggcggaacacccaacagaaaatccatacacttcggacatcaaatcaccgacaaaaatatcactcaactga |
113 |
Q |
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| T |
30472367 |
cacaaaaacaagtaaaaggtgacgtagataggcggaacacccaacagaaaatccatacacttcggacatcaaatcaccgacaaaaatatcactcaactca |
30472268 |
T |
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| Q |
114 |
aggtt |
118 |
Q |
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||||| |
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| T |
30472267 |
aggtt |
30472263 |
T |
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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 30472171 - 30472114
Alignment:
| Q |
210 |
gtgagccaaatcttcaacctccattgcaaatctccaaacgagatccaaacacttatct |
267 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30472171 |
gtgagccaaatcttcaaccaccattgcaaatctccaaacgagatccaaacacttatct |
30472114 |
T |
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