View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8839_low_16 (Length: 259)
Name: NF8839_low_16
Description: NF8839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8839_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 34824219 - 34824311
Alignment:
| Q |
42 |
tgcatcgtgtatactgcagaattagccggagaaccagataatggttgaacatttacaccccacttgttactatctagatggactgcggcaagt |
134 |
Q |
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| T |
34824219 |
tgcatcgtgtatactgcagaattagccggagaaccagataatggttgaacatttacaccccacttgttactatctagatggactgcggcaagt |
34824311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34824153 - 34824194
Alignment:
| Q |
1 |
acagttgaatcaaacttcagttagagaaagacagtttaccat |
42 |
Q |
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| T |
34824153 |
acagttaaatcaaacttcagttagagaaagacagtttaccat |
34824194 |
T |
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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 170
Target Start/End: Original strand, 44147806 - 44147926
Alignment:
| Q |
50 |
gtatactgcagaattagccggagaaccagataatggttgaacatttacaccccacttgttactatctagatggactgcggcaagtacccttttttgacat |
149 |
Q |
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| T |
44147806 |
gtatactgcagaattcgccggggaaccagataacggttgaacatttacaccccacttgttactatccagatggattgcagcaagtgccctctcctgacat |
44147905 |
T |
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| Q |
150 |
agtttttcaagctcatcaatg |
170 |
Q |
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| T |
44147906 |
agtatttcaatctcatcaatg |
44147926 |
T |
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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 5751738 - 5751860
Alignment:
| Q |
48 |
gtgtatactgcagaattagccggagaaccagataatggttgaacatttacaccccacttgttactatctagatggactgcggcaagtacccttttttgac |
147 |
Q |
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| T |
5751738 |
gtgtatactgcaaaattagccggggaaccagataatggttgaacatttacaccccacttgtcaccatctagatgaaatgcagccaatgccctttgttggc |
5751837 |
T |
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| Q |
148 |
atagtttttcaagctcatcaatg |
170 |
Q |
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|||| |||| |||||||||||| |
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| T |
5751838 |
ataggatttcgagctcatcaatg |
5751860 |
T |
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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 32652628 - 32652561
Alignment:
| Q |
74 |
accagataatggttgaacatttacaccccacttgttactatctagatggactgcggcaagtacccttt |
141 |
Q |
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| T |
32652628 |
accagctaatggtttaacacttacaccccacttattacaatctagatggaatgcggcaagtacccttt |
32652561 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 23239446 - 23239399
Alignment:
| Q |
87 |
tgaacatttacaccccacttgttactatctagatggactgcggcaagt |
134 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
23239446 |
tgaacatttacaccccacttgttacaatctagatggaatgcggcaagt |
23239399 |
T |
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