View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8839_low_18 (Length: 250)
Name: NF8839_low_18
Description: NF8839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8839_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 14527126 - 14526885
Alignment:
| Q |
1 |
agcactgaggaagaaccgtgcgcgcctcagcataacacaacacacagtcaagtaatgaaagatctccatagcattgtgctaggccatagttatcatcagg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14527126 |
agcactgaggaagaaccgtgcgcgcctcagcataacacaacacacagtcaagtaatgaaagatatccatagcattgtgctaggccatagttatcatcagg |
14527027 |
T |
|
| Q |
101 |
tcctgtccctgtaactgctgtgccgaagccggtactgcgcatctgctcgctaatcttctccatagtcgcaacaaaattcggaacaaagatgcttgtgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14527026 |
tcctgtccctgtaactgctgtgccgaagccggtactgcgcatctgctcgctaatcttctccatagttgcaacaaaattcggaacaaagatgcttgtgtta |
14526927 |
T |
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| Q |
201 |
tgctctacttgatggccacatgttatcataactgtctctgct |
242 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14526926 |
tgctctacttgatggccacatgttatcataactgtctttgct |
14526885 |
T |
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