View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8839_low_19 (Length: 248)
Name: NF8839_low_19
Description: NF8839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8839_low_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 29090229 - 29089996
Alignment:
| Q |
2 |
ttatgcaaatatcgaatcatcacatcaattgccttggcattatccaccgtcaccgttaatatcttaccatacaacccccaatccctcaaataagtgtcga |
101 |
Q |
| |
|
||||||| |||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29090229 |
ttatgcagatatcgaatcataacatcatttgccttggcattatccaccgttaccgttaatatcttaccatacaacccccaatccctcaaataagtgtcaa |
29090130 |
T |
|
| Q |
102 |
catatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgannnnnnnngtgtagcttcaattcatgatcaacaaaatgaacggtca |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
29090129 |
catatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatga-ttttcttgtgcagcttcaattcacgatcaacaaaatgaacggtca |
29090031 |
T |
|
| Q |
202 |
aactcatgtaatttaagttttgatttgatgtccat |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
29090030 |
aactcatgtaatttaagttttgatttgatgtccat |
29089996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 5933529 - 5933763
Alignment:
| Q |
1 |
attatgcaaatatcgaatcatcacatcaattgccttggcattatccaccgtcaccgttaatatcttaccatacaacccccaatccctcaaataagtgtcg |
100 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5933529 |
attatgcagatatcgaatcataacatcatttgccttggcattatccaccgttaccgttaatatcttaccatacaagccccaatccctcaaataagtgtca |
5933628 |
T |
|
| Q |
101 |
acatatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgannnnnnnngtgtagcttcaattcatgatcaacaaaatgaacggtc |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
5933629 |
acatatttacccaacatgtctcccatgtgacctatgatttggcaaaagttgatga-ttttcttgtgcagcttcaattcacgatcaacaaaatgaacggtc |
5933727 |
T |
|
| Q |
201 |
aaactcatgtaatttaagttttgatttgatgtccat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
5933728 |
aaactcatgtaatttaagttttgatttgatgtccat |
5933763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 5935934 - 5935701
Alignment:
| Q |
2 |
ttatgcaaatatcgaatcatcacatcaattgccttggcattatccaccgtcaccgttaatatcttaccatacaacccccaatccctcaaataagtgtcga |
101 |
Q |
| |
|
||||||| |||||||||||| |||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5935934 |
ttatgcagatatcgaatcataacatcatttgccttggcattatccaccgttatcgttaatatcttaccatacaacccccaatccctcaaataagtgtcaa |
5935835 |
T |
|
| Q |
102 |
catatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgannnnnnnngtgtagcttcaattcatgatcaacaaaatgaacggtca |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| | | |
|
|
| T |
5935834 |
catatttacccaacatgtctcccgtgtgacccatgatttggcaaaagttgatga-ttttcttgtgcagcttcaattcacgatcaacaaaatgaacgatga |
5935736 |
T |
|
| Q |
202 |
aactcatgtaatttaagttttgatttgatgtccat |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5935735 |
aactcatgtaatttaagttttgatttgatgtccat |
5935701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 4316536 - 4316753
Alignment:
| Q |
2 |
ttatgcaaatatcgaatcatcacatcaattgccttggcattatccaccgtcaccgttaatatcttaccatacaacccccaatccctcaaataagtgtcga |
101 |
Q |
| |
|
|||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4316536 |
ttatgcaaatattgaatcataacatcatttgccttggcattatccaccgttaccgttaatatcttaccatacaacccccaatccctcaaataagtgtcaa |
4316635 |
T |
|
| Q |
102 |
catatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgannnnnnnngtgtagcttcaattcatgatcaacaaaatgaacggtca |
201 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
4316636 |
catatttacccaacatgtct---------cctgtgatttggcaaaagttgatga-ttttcttgtgcagcttcaattcacgatcaacaaaatgaacggtca |
4316725 |
T |
|
| Q |
202 |
aactcatgtaatttaagttttgatttga |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4316726 |
aactcatgtaatttaagttttgatttga |
4316753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 16046138 - 16045905
Alignment:
| Q |
2 |
ttatgcaaatatcgaatcatcacatcaattgccttggcattatccaccgtcaccgttaatatcttaccatacaacccccaatccctcaaataagtgtcga |
101 |
Q |
| |
|
||||||| |||||||||||| |||||| ||| |||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
16046138 |
ttatgcagatatcgaatcataacatcatttgtcttggcattacccaccgttaccgttaatatcttaccatacaaccctcaatccctcaaataagtgtcaa |
16046039 |
T |
|
| Q |
102 |
catatttacccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgannnnnnnngtgtagcttcaattcatgatcaacaaaatgaacggtca |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||| ||||||||||||||| |
|
|
| T |
16046038 |
catatttacccaacatgtctcccgtgtgacttgtgatttggcaaaagttgatga-ttttcttgtgcagcttcaattcacgatcagcaaaatgaacggtca |
16045940 |
T |
|
| Q |
202 |
aactcatgtaatttaagttttgatttgatgtccat |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
16045939 |
aactcatgtaatttaagttttgatttgatgtccat |
16045905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 153
Target Start/End: Complemental strand, 10143060 - 10142918
Alignment:
| Q |
11 |
tatcgaatcatcacatcaattgccttggcattatccaccgtcaccgttaatatcttaccatacaacccccaatccctcaaataagtgtcgacatatttac |
110 |
Q |
| |
|
||||||||||| || ||| ||| |||| |||| |||||||| |||||||| || ||||| | |||||| |||| ||| ||||| ||||| |||||||||| |
|
|
| T |
10143060 |
tatcgaatcataacttcatttgacttgacattgtccaccgttaccgttaagattttaccgttcaaccctcaattccttaaatatgtgtcaacatatttac |
10142961 |
T |
|
| Q |
111 |
ccaacatgtctcccgtgtgacccgtgatttggcaaaagttgat |
153 |
Q |
| |
|
||||||| ||| | ||||||||| ||||||| ||||||||||| |
|
|
| T |
10142960 |
ccaacatatcttcggtgtgacccatgatttgacaaaagttgat |
10142918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University